| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1989 |
|---|
| Symbol | |
|---|
| ID | 6178707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2218319 |
|---|
| End bp | 2219140 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641681755 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001808686 |
|---|
| Protein GI | 172061034 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0565] rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.418465 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAACTC CGCTGAACCC CGCCGCGCCG TCCGAATCCG GCGCGGCCTC GTCCCCGCCG
CCGTCCGGCG GTTTCACGTC CACCCGTTTC GTGCTCGTCG AGCCGAGCCA TCCCGGCAAT
GTCGGGGCGG CCGCCCGCGC GCTGAAGACG ATGGGTTTCT CCCGGCTCGT GCTGGTCGCG
CCGCGCGTGC CGCACGTGCA GGACGACCCC GAGGCGATCG CGATGGCGAG CGGCGCCGAC
GACGTCCTGG CCTCCGCGCA TGTCGTGCCC ACGCTCGGCG ACGCGCTGTC CGGCGTCCAC
TGGTCGATCG CGCTGACCGC CCGCACGCGC GAATACGGGC CGCCGCGGCT GGCGCCGCGC
GCGGCCGCCG AGCAGGCGTG CATGCAGGTC GGCGCCGGCG ATATCGCTCT CGTGTTCGGC
AACGAGCGCA CGGGCCTCGC GAACGAGCAC GTCGAGCAAT GCAGCGCGCT CGCGCACATC
CCGGCGAATC CGGCCTACAG CTCGCTGAAC CTCGCGCAGG CCATACAGGT GCTCGCGTAC
GAGCTGCGCG TCGCGTTCCT GGAGCAGGGG AGCGGGCTGC ACCACGCGCA GGCCGAGGTC
GGCACGCTCG CGCAGAGCGA TGAGATCGAG CGGATGTACG CGCACCTCGA GAACGCGCTG
GTCGCACTGG ATTTCCTCGA CCCGCGCAAC CCGAAGAAGC TGATGCCGCG GCTGCGGCGC
CTGTTCGCGC GCACGGGCCT CGAGCGCGAG GAAGTCAACA TCCTGCGCGG CATCGCGAAG
CACATCCTGC TGAAGTCGGG TACGCCTGCC GGCGACGCGT AA
|
|---|
| Protein sequence | METPLNPAAP SESGAASSPP PSGGFTSTRF VLVEPSHPGN VGAAARALKT MGFSRLVLVA
PRVPHVQDDP EAIAMASGAD DVLASAHVVP TLGDALSGVH WSIALTARTR EYGPPRLAPR
AAAEQACMQV GAGDIALVFG NERTGLANEH VEQCSALAHI PANPAYSSLN LAQAIQVLAY
ELRVAFLEQG SGLHHAQAEV GTLAQSDEIE RMYAHLENAL VALDFLDPRN PKKLMPRLRR
LFARTGLERE EVNILRGIAK HILLKSGTPA GDA
|
|---|
| |