Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1956 |
Symbol | |
ID | 6178314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 2178697 |
End bp | 2179578 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641681714 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001808653 |
Protein GI | 172061001 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00233066 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.263741 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCGC CTGCCCAAGC CGACACATCG AACCCCTACG ACGTCATCGA CATCCCGCCC GAGTTCGCGC CGACCCGCGT CCACCCGATG CGCGTCCGGG CGCGGCAGGT GGATGCCGGC CGGCGGATCC CGCTGCACAC GCATGCGTGG GCGCAGCTCG CGTACGCGTC GCGCGGGGTG CTGCGCGTCG CGACGACCGG GACGACGTGG ATGGTGCCGC CGTCCCGCGC GATCTGGGTG CCGCCGCACG TCACGCACGA AGTCGTGATC GTCGAGGACG CGTATCTGCG CACGCTGTAT ATCGACGAGT CGATCGTGCC GGACGGGCTC GATGCATGCC GGGTGGTCGA GGTGACGGGC TTGCTGCGCG AACTGATCGT CGCGCTCGAC GCGCGCGACC TGAGCGATGC GCGCGAGCGG CTGCTGTGCG GGCTCGTGCT CGACGAGCTG AGCCGCGCCG AACCGCTGCC GCTCGCGGTG CCGATGCCCG ACGAGAAACG GCTGCGCATG CTGTGCGAGT CGGTGCTCGC GCAACCGGCG CATGCGGAAT CGCTCGAGCA CTGGGCAAGC GAGGTCGGCG CGAGCACGCG CACGATTTCG CGGCTCTTCA AGCAGGAGCT GGGCGTGAGT TTTTCGCAGT GGCGGCAGCA GGCGCTGCTC GCGCGCGCGA TCCCGCTGTT GAACCAGGGG CGTCCGCTGT CGCATATCGC GCGCGAACTC GGCTACCAGA GCCAGAGTGC GTTTTCGGCG ATGTTCCGGC GCGCGTTCGG CGAAAGCCCG CGCGCGTTCA TGCTGCGCGG CTACGAGCAC CGCGGCGCGG AAGACGGCAT CGCGACGGAC GACGCCCTCG ACGACGACGA CGCGTTCGGC ACCGCCCGCT GA
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Protein sequence | MNPPAQADTS NPYDVIDIPP EFAPTRVHPM RVRARQVDAG RRIPLHTHAW AQLAYASRGV LRVATTGTTW MVPPSRAIWV PPHVTHEVVI VEDAYLRTLY IDESIVPDGL DACRVVEVTG LLRELIVALD ARDLSDARER LLCGLVLDEL SRAEPLPLAV PMPDEKRLRM LCESVLAQPA HAESLEHWAS EVGASTRTIS RLFKQELGVS FSQWRQQALL ARAIPLLNQG RPLSHIAREL GYQSQSAFSA MFRRAFGESP RAFMLRGYEH RGAEDGIATD DALDDDDAFG TAR
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