| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1937 |
|---|
| Symbol | |
|---|
| ID | 6179091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 2158984 |
|---|
| End bp | 2160870 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641681696 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001808635 |
|---|
| Protein GI | 172060983 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.832952 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTCGAGT CGGCCTCGTT CGTGCTCAAT CCCGGTGAAA AGGCCGGCCT GATCGGCGCG
AACGGCGCCG GCAAATCGAC GCTGTTCTCG GTCCTGCGCG GCGAGCTGCA TTCCGACGCC
GGCGATTTCT CGATGCCGCC GTCGTGGCGG ATCGCCCACG TGTCGCAGGA AACGCCCGCG
GTCGACCGCT CGGCGCTCGA CTACACGCTC GACGGCGACA CCGCGCTGCG CGAGATCGAG
GCGCGCATCG CCGCCGCGTC GGCCGCGCAT GACGGCGCGG CCGAAGCCGA CGCGCACGCG
GCGTTCGCCG ACGCCGACGG CTATACCGCA CCGGCGCGCG CCGAAGCGCT GCTGCTCGGC
CTCGGCTTCA CGCTCGCGCA GACGCGCGAG TCGGTCGCCA GCTTCTCCGG CGGCTGGCGC
ATGCGCCTGA ACCTCGCGCA GGCGCTGATG TGCCGCTCCG ACCTGCTGCT GCTCGACGAA
CCGACCAACC ACCTCGACCT CGACGCGATC GTCTGGCTCG AGGACTGGCT GCACCGCTAC
GCCGGCACGC TCGTCGTGAT CTCGCACGAC CGCGAATTCC TCGATTCGAT CTGCAACGTC
ACGCTGCATC TGGAAAATCG CCAGGTGAAG CGCTACGGCG GCAACTACTC GCAATTCGAA
GTGCTGCGCG CGCAGCAGCT TGCGCTGCAG CAAAACGCAT ACGAAAAGCA GCAGAAGACG
ATCGAGCACC TGCAGAGCTT CGTCGACCGC TTCAAGGCCA AGGCCAGCAA GGCCAAGCAG
GCGCAGAGCC GGATGAAGGC GCTCGAGAAG ATGGAACTGA TCGCGCCCGC GCACATCGCG
TCGCCGTTCA CGTTCGAGTT CCGCACGCCC GACGCCGCGC CGAACCCGAT GATGGTGATG
GAAGACGTCC GCTGCGGCTA CCATGCCGAC GACGGCACGG ACATCCCGAT CGTCGAACGC
GTGGCGCTGT CGATCCAGAA CGGCCAGCGC ATCGGCCTGC TCGGCGCGAA CGGCCAGGGG
AAATCGACGC TGATCAAGAC GCTGGCCGGC ACGCTCCCGC CGCTGTCGGG CCAGGTGCGC
GACGGCAAGG GCCTGACGAT CGGCTATTTC GCGCAGCACC AGCTCGAAAC GCTGCGTGAG
GACGATTCGC CGCTCGCGCA TCTCGCGCGG CTCGCGCCCG ACACGCGCGA GCAGGAACTG
CGCGACTTTC TCGGCGGCTT CAATTTTTCC GGCGAGATGG CGACGAGCCC GGTCGGCCCG
TTCTCCGGCG GCGAGAAAGC GCGGCTCGCG CTTGCGCTGA TCATCTGGCA GAAGCCGAAC
CTGCTGCTGC TCGACGAGCC GACCAACCAC CTCGACCTCG AAACGCGTCA CGCGCTGACG
ATGGCGCTCG CGCAGTTCGA AGGCACGCTG ATCCTCGTCT CGCACGACCG CCACCTGCTG
CGCGCGACCA CCGACCAGTT CATGCTCGTC GCGAAGCATC GCCTGCAGCC GTTCGACGGC
GACCTCGACG ATTACCGCGA CTGGCTGCTG CAGCACGCGG CCGAGCAGCG TGCTGCCGCG
AAGGCCGACG GCGCGGCGGC GACGGGCGCC GATCCGGGCG TGAACCGCAA GGATCAGAAG
CGCCAGGCGG CCGAGGAGCG CCAGCGCCTG TCGCAGCTGA AAAAGCCGCT GCAGAACCGC
ATCACGAAGC TCGAAAAGGA AATGGAAACG CTGCACGCGG AAAAGGCGCG CCTCGACGCG
TTCGTCGCCG ATCCGGCGAG CTACGAGGCC GCACGCAAGA CGGAGCTGAC CGAGGCGATC
CGCAAGCTCG GCGAGGTCAA CAGCCGGCTC GAGACGGTCG AGGCCGACTG GCTTGCCGTG
CACGAAGAGC TCGAGCAGAT CGGCTGA
|
|---|
| Protein sequence | MFESASFVLN PGEKAGLIGA NGAGKSTLFS VLRGELHSDA GDFSMPPSWR IAHVSQETPA
VDRSALDYTL DGDTALREIE ARIAAASAAH DGAAEADAHA AFADADGYTA PARAEALLLG
LGFTLAQTRE SVASFSGGWR MRLNLAQALM CRSDLLLLDE PTNHLDLDAI VWLEDWLHRY
AGTLVVISHD REFLDSICNV TLHLENRQVK RYGGNYSQFE VLRAQQLALQ QNAYEKQQKT
IEHLQSFVDR FKAKASKAKQ AQSRMKALEK MELIAPAHIA SPFTFEFRTP DAAPNPMMVM
EDVRCGYHAD DGTDIPIVER VALSIQNGQR IGLLGANGQG KSTLIKTLAG TLPPLSGQVR
DGKGLTIGYF AQHQLETLRE DDSPLAHLAR LAPDTREQEL RDFLGGFNFS GEMATSPVGP
FSGGEKARLA LALIIWQKPN LLLLDEPTNH LDLETRHALT MALAQFEGTL ILVSHDRHLL
RATTDQFMLV AKHRLQPFDG DLDDYRDWLL QHAAEQRAAA KADGAAATGA DPGVNRKDQK
RQAAEERQRL SQLKKPLQNR ITKLEKEMET LHAEKARLDA FVADPASYEA ARKTELTEAI
RKLGEVNSRL ETVEADWLAV HEELEQIG
|
|---|
| |