Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1931 |
Symbol | dapD |
ID | 6177343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 2153283 |
End bp | 2154110 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641681690 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_001808629 |
Protein GI | 172060977 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.509599 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCAAC AACTTCAGCA AATCATCGAT ACCGCCTGGG AAAACCGCGC CGAGCTGTCG CCGAAGGCCG CGCCGGCCGA CGTCCGCGAA GCGGTCGCTC ATGCGATCGA GCAACTCGAC AAAGGCGCAC TGCGCGTCGC CGAGAAGATC GACGGCAACT GGACCGTGCA CCAGTGGCTG AAGAAGGCCG TGCTGCTGTC GTTCCGCCTG GAGGACAACG CGCCGATGCC GGCCGGCGGC TACTCGCAGT TCTACGACAA GGTTCCGTCG AAGTTCGCGA ACTACACCGC TGAAGACTTC GCCGCGGGCG GCTTCCGCGT CGTGCCGCCG GCCATCGCGC GCCGCGGCTC GTTCATCGCG AAGAACGTCG TGCTGATGCC GTCGTACACC AACATCGGCG CGTACGTCGA CGAAGGCACG ATGGTCGACA CGTGGGCCAC GGTCGGTTCA TGCGCACAGA TCGGCAAGAA CGTGCACCTG TCGGGCGGCG TCGGCATCGG CGGCGTGCTC GAACCGCTGC AGGCGAACCC CGTCATCATC GAGGACAACT GCTTCATCGG CGCGCGCTCG GAAGTCGTCG AAGGCGTGAT CGTCGAGGAG AATTCGGTGA TCTCGATGGG CGTGTACCTC GGCCAGAGCA CCAAGATCTA CGATCGCGAA ACGGGCGAAG TCAGCTACGG CCGCATCCCG GCCGGCTCGG TCGTCGTGGC CGGCAACCTG CCGTCGAAGG ACGGCTCGCA CAGCCTGTAC TGCGCGGTGA TCGTGAAGAA GGTCGACGCG AAGACCCGCG CGAAGGTCGG CCTGAACGAG CTGCTGCGAG GCGACTGA
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Protein sequence | MSQQLQQIID TAWENRAELS PKAAPADVRE AVAHAIEQLD KGALRVAEKI DGNWTVHQWL KKAVLLSFRL EDNAPMPAGG YSQFYDKVPS KFANYTAEDF AAGGFRVVPP AIARRGSFIA KNVVLMPSYT NIGAYVDEGT MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPLQANPVII EDNCFIGARS EVVEGVIVEE NSVISMGVYL GQSTKIYDRE TGEVSYGRIP AGSVVVAGNL PSKDGSHSLY CAVIVKKVDA KTRAKVGLNE LLRGD
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