Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1926 |
Symbol | |
ID | 6179100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 2143583 |
End bp | 2145658 |
Gene Length | 2076 bp |
Protein Length | 691 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641681685 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_001808624 |
Protein GI | 172060972 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.55791 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.279266 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCGAA CCCAAGCCGA ACCGCCAGCC AGCCAGCCCG ACGCGCGTGC CGCGTGGCTG CGCGACCAAC TCGAGCGGGC GAATTACGCC TATTACGTGC TCGACCAGCC GGATCTGCCC GATGCCGAAT ACGATCGACT GTTCGGCGAG CTGCAGCAAC TCGAAACCGA TCATCCCGAC CTCGTGACGC CCGATTCGCC AACGCAGCGC GTCGGCGGCG AGGTGGCCGG CGGTTTCACG CCGGTCGTCC ATGATGCGCC GATGCTGTCG CTGAACAACG GCTTCGCCGA CGAGGACATC GCCGCGTTCG ACAAGCGCGT CGCCGATGCG CTCGGCAAGA CGACCGATCT CGCCGGCTCG GTGACGGACC CGGTCGAATA TGCGTGCGAG CTGAAGTTCG ACGGGCTCGC GATCTCGCTG CGCTACGAGC ACGGCGTGTT CGTGCAGGCG TCGACGCGCG GCGACGGCAC GACCGGCGAG GACGTGACCG AGAACGTCCG CACGATCCGC TCGATCCCGC TGAAGCTGAA GGGCGCGCAC GTGCCGGCCC TGCTCGACGT GCGCGGCGAG GTGCTGATGT TCAAGCGCGA TTTCGCACGC CTGAACGAAC GCCAGCGCGC GGCCGAGCAG CGCGAATTCG CGAACCCGCG CAACGCGGCG GCCGGCAGCC TGCGCCAGCT CGATCCGAAG ATCACCGCGC AGCGTCCGCT GTCGTTCTTC GCGTACGGGA TCGGCGTGCT CGACGGCATG CCGATGCCGG ACACGCACAG CGCGCTGCTC GACTGGTACG AGTCGTTCGG CCTGCCGGTG AACCGCGAGC GCGCGGTCGT GTACGGCGCC GACGGCCTGC TCGGCTTCTT CCGCAAGGTC GGCGAGAAGC GCGAGTCGTT GCCGTACGAC ATCGACGGCG TCGTCTACAA GGTGAACCGG CGCGACGAAC AGGATCGCCT CGGCTTCGTG TCGCGCGCAC CGCGCTTCGC GCTCGCGCAC AAGTTTCCCG CACAGGAAGC GCTGACCCGG CTCGTCGCGA TCGACGTGCA GGTCGGCCGC ACGGGTGCGA TCACGCCGGT CGCGCGACTC GAACCGGTGT TCGTCGGCGG CGCGACGGTG ACCAACGCGA CGCTGCACAA CGAGGACGAA GTGCGCCGCA AGGACATCCG GATCGGCGAC ACCGTGATCG TGCGGCGGGC GGGCGACGTG ATCCCCGAGG TCGTCGGTGC GCTGCTCGAG CGCCGGCCGG ACGACGCGGC CGAATTCGTG ATGCCGACCG AGTGCCCGGT GTGCGGCTCG AAGATCGAGC GGCTGCCGGA CGAGGCGATC GCGCGCTGCA CGGGCGGCCT GTTCTGCCCG GCGCAGCGCA AGCAGGCGCT GTGGCACTTC GCGCAGCGTC GCGCGCTCGA CATCGACGGG CTCGGCGAAA AGATCATCGA TCAGCTCGTC GAACTGAATC TCGTGCGCAC GCCGGCCGAC CTGTTCAATC TCGGTTTCGC GACGCTCGCG GAACTCGACC GGTTCGCCGA GAAGTCCGCG CAGAATTTGC TCGACTCGCT CGAGAAGGCG AAGCACACGA CGCTCGCGCG CTTCATCTAC GGGCTCGGCA TTCGCCATGT CGGCGAATCG ACCGCGAAGG ATCTCGCGAA GCACTTCGGG TCACTGACCC CGATCATGGA CGCGTCGATC GAGGAACTGC TCGAAGTCAA CGACGTCGGG CCGATCGTCG CCGAGTCGAT CCACCAGTTC TTCGCGGAAG AACACAACCG CACCGTGATC GAGCAACTGC GCGCGCCCGG CAAGGTCACG TGGCCCGAAG GCCCGCCCGC GCCGAAGGCG CCACAGGGCG TGCTGGCCGG CAAGACGGTC GTGCTGACGG GCACGCTGCC GAATCTCACC CGCGACGCGG CGAAGGAGAT GCTCGAAGCG GCGGGCGCGA AAGTCGCGGG CTCGGTATCG AAGAAGACGG ATTACGTGGT CGCGGGCGCC GATGCCGGCA GCAAGCTCGC GAAGGCCGAG GAACTCGGCA TCCCCGTACT GGACGAAGAC GGACTGCACC AACTCCTGGA GGGCAACACC CCATGA
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Protein sequence | MARTQAEPPA SQPDARAAWL RDQLERANYA YYVLDQPDLP DAEYDRLFGE LQQLETDHPD LVTPDSPTQR VGGEVAGGFT PVVHDAPMLS LNNGFADEDI AAFDKRVADA LGKTTDLAGS VTDPVEYACE LKFDGLAISL RYEHGVFVQA STRGDGTTGE DVTENVRTIR SIPLKLKGAH VPALLDVRGE VLMFKRDFAR LNERQRAAEQ REFANPRNAA AGSLRQLDPK ITAQRPLSFF AYGIGVLDGM PMPDTHSALL DWYESFGLPV NRERAVVYGA DGLLGFFRKV GEKRESLPYD IDGVVYKVNR RDEQDRLGFV SRAPRFALAH KFPAQEALTR LVAIDVQVGR TGAITPVARL EPVFVGGATV TNATLHNEDE VRRKDIRIGD TVIVRRAGDV IPEVVGALLE RRPDDAAEFV MPTECPVCGS KIERLPDEAI ARCTGGLFCP AQRKQALWHF AQRRALDIDG LGEKIIDQLV ELNLVRTPAD LFNLGFATLA ELDRFAEKSA QNLLDSLEKA KHTTLARFIY GLGIRHVGES TAKDLAKHFG SLTPIMDASI EELLEVNDVG PIVAESIHQF FAEEHNRTVI EQLRAPGKVT WPEGPPAPKA PQGVLAGKTV VLTGTLPNLT RDAAKEMLEA AGAKVAGSVS KKTDYVVAGA DAGSKLAKAE ELGIPVLDED GLHQLLEGNT P
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