| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1617 |
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| Symbol | |
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| ID | 6176633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1816735 |
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| End bp | 1819317 |
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| Gene Length | 2583 bp |
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| Protein Length | 860 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641681378 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001808320 |
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| Protein GI | 172060668 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCACG AACATGCCGA TTTGCCGGCG ATTCTGATCA TCGATGACGA CGCGATGACG
CGGCTGCTGG TCGTGGAAAC GCTGGAGCCC GATGGTTTTC GCGTCGAGGA GGCGACGGGG
CCGCAGGAAG GCATCGAAGC GTTCCTGCGT CATCGTCCCG CCGTCGTGCT GCTCGATGTC
GAGATGCCCG GCGGCGACGG CTTCGACTGC TGCCGCGCGC TGCGCGCGTT GCCGGAAGGC
CGCCGCGTGC CGATCGTGAT GCTCACCGGC AACGACGACG ACGCATCGAT CGCCAGCGCG
TTCGACGCCG GCGCGACCGA TTTCGTATCG AAGCCGATGC GATGGAAGCT GCTTGGCTAC
CGGATCCGGT ATCTGCTGCG CGCCGCCGCG GCGGTCGAAA AGCTGGCGAC CACCGAGGTC
AGCCTCATGC ACGCGCAAGC GCTCGCGCAT GTCGGCAACT GGGAATTCCA GGCGGGCCGC
ACGGAGGGCT ACTGGTCGCC GGAGCTGTAC CGGATCCTCG GGCTCGACGC GGCGCACGCG
CCGCCGACGT TCGAGCGGCT GCTGCAGGCC GTGCCGGCCG ACGAACAGCC GTTGCTCGTG
CAGTCGTTCA CGAGCCTGCG CACCGAGGGC GTGCCGTTCT CGCTCGAGCA TCGGCTCGTT
CACGCGGACG GCACCGAGCG CTGCGTGCTG CATCAGGCGG AGTCGGGGCG CGATCCGGAT
CACGCGATCA TCCTGCGCGG CATCGTGCAG GACATCACCG AGCGCAAGAT GCAGCAGGGC
CGCATCGAAT ACCTTGCCAA CCACGATGCG CTCACCGGCC TGCCCAATCG CAACCTGCTG
AGCGACCGGA TGGAGCAGGC GATGTCGCAG GCGCGCCGCA CCGGGCAGCT GGTCGCGGTG
ATGGTGCTCG ACCTCGACCG CTTCAAGCAC ATCAACGACA GCTTCGGCCA CTCGGTCGGC
GACGGGCTGC TGCGCGTCGT CGCCGCTCGG CTGAAGCGCT CCGTGCGCGA CGGCGACACG
GTCGCGCGGC TCGGCGGCGA CGAATTCGTC GTGATGCTGG TCAACCTGGC GACGCAAGCG
GACGCGGACG TGATCGCCCG CAAGATCCTC GACACCTTCA TCGAGCCGTT CACGCTCGAC
GAACACGACC TGCACGTGAC GACCAGCGTC GGCGTGAGCC TCTGCCCGAC CGACGGCGCC
AACGCCGAAA CGCTGCTGAA AACGGCCGAC GCGGCGCTGT ATGCGGCGAA GGAACACGGG
CGCAACTGCT ACCGCTTCTA CACGCGCGAG CTCGGTGCGC GCGTCGAGGA GCAGACGATC
CTCGAGAACG CGCTGCATCA GGCCGTCGCG AACCACGAGC TCGAGCTGTA CTACCAGCCG
AAGGTCGATC TCAAGACCGG CCAGATCAGC GGCGTCGAGG CGCTGATACG CTGGCGGCGG
CCGGGCATCG GCGTGATTCC GCCCGACCGC TTCATCCCGA TCGCCGAAGA CTGCGGGCTG
ATCTTGCCGA TCGGCGAGTG GGTGTTGCGC ACGGCGTGCC TGCAGGCCGT CGCATGGCGC
CGGGAAGGCC ATCCGCCGAT CCGGATCGCC GTCAACCTGT CGGCGCGCCA GTTCCGGCAG
CAGGACGTGG CCGCCATGGT GCGCACGACG CTCGAGGAGA CCGGCCTGGC GCCGGACTCG
CTCGAACTCG AACTCACCGA AAGCGTGCTG ATGCAGGACT GCGACGCGAT CGCGCACACG
CTGCGCGAAC TGAAGGCGCT CGGCGTCGTG CTGTCCCTCG ACGATTTCGG CACCGGCTAT
TCGAGCCTGT CGTACCTGAA GGACTTGCCG ATCGACGTCG TGAAGATCGA CCGGTCGTTC
CTCGACGACG TCACCACCAG CGCCGAAGGC GCTTCGCTGA CGCGCTCGAT CATCGCGATG
GCCGAGTCGC TGCACATGGA GACGGTGGCC GAGGGCGTGG AGACCGAAGC GCAGCTGTCG
TTCCTGAACC GGCATCGCTG CCATGCGATG CAGGGCTACT ACTTCAGCCA TCCGGTCACC
GGTGATGAAA TCGCCGACAT GCTGTCCGCC GGCTCGCAGC TTCCCGAGCA CTGCCGGCAG
CGCGAATTGC TGCACCGGAC GCTGCTGCTG GTGGACGACG ACCGCGAGGT CCTGCGCAGG
CTCAGGCGCG CGCTCGGCCG CGACGGCTAC GAGATTCTCG ACACGACGGA TCCCGACGAA
GCGCTCGTCC TGCTCGCGCA GCATCGCGTC GGCGTGATCG TGTCGGATTT CCGCATGCCG
AGCCTGTCCG GCATCGACCT GCTGCAGCGT GTGAAGGCGC TGTACCCGGA CATCGTGCGC
ATCCTGCTGT CGGGCTACGG GGAAGGGGAC GCGCTCGCCG ACGCGGCCGG CAACGGCTCC
GTCCAGAAAT TGCTGATCAA GCCGTGGGAT GTCGCGCTGC TGCGCAAGCA TATTGCGGAG
TCGTTCCAGC GGTTCGAGCA CAGCTCGCTG CAGAGCCGGG TGGGCCTCGG CGCGGGCCAT
CTCGGCATTC ATCCGTCTCC GCTGAGGGCC GTCGACGTGG CGCAAGCGCC TGGGCGAACC
TGA
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| Protein sequence | MNHEHADLPA ILIIDDDAMT RLLVVETLEP DGFRVEEATG PQEGIEAFLR HRPAVVLLDV
EMPGGDGFDC CRALRALPEG RRVPIVMLTG NDDDASIASA FDAGATDFVS KPMRWKLLGY
RIRYLLRAAA AVEKLATTEV SLMHAQALAH VGNWEFQAGR TEGYWSPELY RILGLDAAHA
PPTFERLLQA VPADEQPLLV QSFTSLRTEG VPFSLEHRLV HADGTERCVL HQAESGRDPD
HAIILRGIVQ DITERKMQQG RIEYLANHDA LTGLPNRNLL SDRMEQAMSQ ARRTGQLVAV
MVLDLDRFKH INDSFGHSVG DGLLRVVAAR LKRSVRDGDT VARLGGDEFV VMLVNLATQA
DADVIARKIL DTFIEPFTLD EHDLHVTTSV GVSLCPTDGA NAETLLKTAD AALYAAKEHG
RNCYRFYTRE LGARVEEQTI LENALHQAVA NHELELYYQP KVDLKTGQIS GVEALIRWRR
PGIGVIPPDR FIPIAEDCGL ILPIGEWVLR TACLQAVAWR REGHPPIRIA VNLSARQFRQ
QDVAAMVRTT LEETGLAPDS LELELTESVL MQDCDAIAHT LRELKALGVV LSLDDFGTGY
SSLSYLKDLP IDVVKIDRSF LDDVTTSAEG ASLTRSIIAM AESLHMETVA EGVETEAQLS
FLNRHRCHAM QGYYFSHPVT GDEIADMLSA GSQLPEHCRQ RELLHRTLLL VDDDREVLRR
LRRALGRDGY EILDTTDPDE ALVLLAQHRV GVIVSDFRMP SLSGIDLLQR VKALYPDIVR
ILLSGYGEGD ALADAAGNGS VQKLLIKPWD VALLRKHIAE SFQRFEHSSL QSRVGLGAGH
LGIHPSPLRA VDVAQAPGRT
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