| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1535 |
|---|
| Symbol | |
|---|
| ID | 6177567 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1703838 |
|---|
| End bp | 1704638 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641681296 |
|---|
| Product | Pili assembly chaperone, N-terminal |
|---|
| Protein accession | YP_001808238 |
|---|
| Protein GI | 172060586 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0256445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.556062 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGGCT CGGCCTTTCG TTTCGCTTCC GTTATCCGCG CGTTGCCGCG CCGCCGTTTG
CATGGGCGGC CCGGCGCCGG TCGCATCGTG CGCGCGGCGG TGCTGGCCTG CGTCGCGAGT
ATCGGCACGG TCCGGTGCGA CGCGGCGTTG TCCGTGATCG GCACCCGCTT CGTTTATCCG
GGCGATGCGC GCGCACTGAC GATCTTCGCG CGCAACAGCG GGGACGCCCC CATTCTCGTC
CAGGCCTGGC TCGACGATGG CGATGCGAAC GCCGACCCAA GCCGCTTGCG TGTGCCGTTC
GTCGTCGCGC CGCCGCTCGC CCGGCTCGAT CCGGGGCAGC CGCTGTCGAT CCGTGTGCAG
TCCATCGGCG GCAGTCTCGC CGCGGACCGC GAGTCCTGTT TCTGGATCAA CCTGCTCGAA
GTACCGCCGG CCGCGCCGGC GGGCGACCAC GCGCTGCGCC TCGCGTACCG GCTCCGGATG
AAGCTGCTGG TTCGGCCGCC CGGTCTCGAC GGCGATCCGG ACGACGCACC GAACCGTCTC
GCATGGACGC ACGCCGGCAC GAAGGCGGCA GCGTCGATCG TCGCGCTCAA TCCCACGCCG
TACTACGTGA CGCTGACGCG CGTGTTGCTG AACGGCGAGC GTGCGGTGCC GGCGAACACG
GCGACGGATA TCGCGCCGTT CGGCCGGGTC GAGATCCCGA TCGGCACGCA GGCGGGCGCG
GGGCCGGGCG AGATCGTGTT CGACGCCGTC GACGACAGCG GTGCAACGCA TCAATACCGG
GTGCGGCTCG CGCCGCCGTG A
|
|---|
| Protein sequence | MHGSAFRFAS VIRALPRRRL HGRPGAGRIV RAAVLACVAS IGTVRCDAAL SVIGTRFVYP
GDARALTIFA RNSGDAPILV QAWLDDGDAN ADPSRLRVPF VVAPPLARLD PGQPLSIRVQ
SIGGSLAADR ESCFWINLLE VPPAAPAGDH ALRLAYRLRM KLLVRPPGLD GDPDDAPNRL
AWTHAGTKAA ASIVALNPTP YYVTLTRVLL NGERAVPANT ATDIAPFGRV EIPIGTQAGA
GPGEIVFDAV DDSGATHQYR VRLAPP
|
|---|
| |