| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1530 |
|---|
| Symbol | |
|---|
| ID | 6177714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1695433 |
|---|
| End bp | 1697112 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641681291 |
|---|
| Product | SpoVR family protein |
|---|
| Protein accession | YP_001808233 |
|---|
| Protein GI | 172060581 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2719] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.376164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.61215 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCC GCCACCTGCA CAACGAGTCG CGCGGCTACG CGCCGCGCCC TTCCGGCGAC
GCCACGGCCG GTCCTGCCGC ATCGCAGCAA AGCGGCCGGG TCGAACCGGC GCCGCCGGCC
GCCGACTTGC CCGGCTCCGG GCAGAAGGAA GCGCGTATGA ACGTTGCCGA ACGCAAGCCG
CTGCCGTGCC CGTCCGACTG GACGTTCGAA CTGCTCGAGG AATACGACAC GCACATCTCG
CAGGTCGCCG AGCAATACGA GCTCGATATC TATCCGATCC AGCTCGAACT GATCAGCGCC
GAGCAGATGA TGGACGCGTA CGCATCGGTC GGGATGCCGG TCAACTATCG CCACTGGTCG
TTCGGCAAGC ACTTCCTCGC GACCGAGAAG AGCTATCGCC GCGGCCAGAT GGGCCTCGCG
TACGAAATCG TCATCAACTC GAACCCGTGC ATCGCGTATC TGATGGAAGA GAACACGATG
ACGATGCAGG CGCTCGTCAT CGCGCACGCG GCATACGGGC ACAACTCCTT CTTCAAGGGC
AACTACCTGT TCCGGCTGTG GACCGACGCG CACGCGATCA TCGACTACCT CGTGTATGCG
AAGAACTACG TCGCCGAATG CGAGGAGCGC TACGGCCTCG ATCGCGTCGA GGAACTGCTC
GATTCGTGCC ATGCGCTGAT GAACTATGGC GTCGACCGCT ACAAGCGGCC GCAGAAACCG
TCGCTGTCGA AGGAGGCCGC GCTGCGGCGC GAGCGCGAGG CGTATCTGCA GTCGCAGGTC
AACGAGCTGT GGCGCACGCT GCCGGGCAAG AAGCCCGAGC AGATGGAGGA ACAGGAGGAA
CGCTATCCGC CGGAGCCGCA GGAGAACCTG CTGTATTTCG CGGAGAAGAA CGCGCCGCTG
CTCGAGCCGT GGGAGCGGGA AGTGATCCGC ATCGTGCGCA AGATCGGCCA GTACTTCTAT
CCGCAGCGGC AGACGCAGGT GATGAACGAG GGTTGGGCGA CGTTCTGGCA CTACACGCTG
CTGAACACGC TGTACAACCA GGGCAAGCTG GAAGACGGCT TCATGATGGA GTTCCTGCAT
TCGCACAGCA ACGTGGTCTA CCAGCCGCCC GTGACGAAGC CGTACTACAA CGGGATCAAC
CCGTATGCGC TCGGCTTCTC GATGATGAGC GACATCCGCC GGATCTGCGA AGCACCGACG
GAAGAGGACT ACAAGTGGTT TCCGGGGATC GCGGGCACCC CGTGGCTGCC GGCGATGCAC
TACGCGATGC GCAACTTCAA GGACGAGAGC TTCATCGCGC AGTACCTGTC GCCGAACCTG
ATCCGCGAGA TGCGGCTGTT CTCGGTGCTC GACGACGACA TGCGCGATTC GCTCGAGGTG
TCGGCGATCC ACGACGAGGC CGGATATCAA TACGTGCGCC AGGCGCTGTC GCGGCAGTAC
GACATCCATC ATCGCGAGCC GAACATCCAG GTCTGGGCCG TGAACACGCG CGGCGACCGT
AGCCTCACGC TGCGCCACTT CATGACCGAC AACCGCCATC TGTCGAACGA CAGCGAAGAA
GTGCTCAAGC ACATGGCGCG ACTCTGGCAG TTCGACGTGT TCCTGGAAAG CGTCGACGAG
GCCGGTACCG TGCGCAAGCG CTACGAGTGC CGCTACGTGC CGCCCGAGGT GCGCATCTGA
|
|---|
| Protein sequence | MTTRHLHNES RGYAPRPSGD ATAGPAASQQ SGRVEPAPPA ADLPGSGQKE ARMNVAERKP
LPCPSDWTFE LLEEYDTHIS QVAEQYELDI YPIQLELISA EQMMDAYASV GMPVNYRHWS
FGKHFLATEK SYRRGQMGLA YEIVINSNPC IAYLMEENTM TMQALVIAHA AYGHNSFFKG
NYLFRLWTDA HAIIDYLVYA KNYVAECEER YGLDRVEELL DSCHALMNYG VDRYKRPQKP
SLSKEAALRR EREAYLQSQV NELWRTLPGK KPEQMEEQEE RYPPEPQENL LYFAEKNAPL
LEPWEREVIR IVRKIGQYFY PQRQTQVMNE GWATFWHYTL LNTLYNQGKL EDGFMMEFLH
SHSNVVYQPP VTKPYYNGIN PYALGFSMMS DIRRICEAPT EEDYKWFPGI AGTPWLPAMH
YAMRNFKDES FIAQYLSPNL IREMRLFSVL DDDMRDSLEV SAIHDEAGYQ YVRQALSRQY
DIHHREPNIQ VWAVNTRGDR SLTLRHFMTD NRHLSNDSEE VLKHMARLWQ FDVFLESVDE
AGTVRKRYEC RYVPPEVRI
|
|---|
| |