Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1419 |
Symbol | |
ID | 6177149 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 1573245 |
End bp | 1574963 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641681176 |
Product | RNA-binding S4 domain-containing protein |
Protein accession | YP_001808123 |
Protein GI | 172060471 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0617825 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACAGATA TCCACGATAT TGAATCGTCC GCGCCTGCCG CACAGGCCGC GCGTGCCGAC GATGCGCCGG AGCAGGACGC TCCGGCCGCG GGTGGTGACG AGCGTCCCCG CCGCGGCCTG CGGCGCGGTC CGCGCAGCCT GATCGCGCGT CGCCGCGCGG CGGCCAAGTC GAAGGGCGCC GAGGGCGAGT CGCAGGACGG CGAAGGCGCA GACGCGCCGC CGGCCGAGGC CGCCGAAGCG CAGCCCGCAC GCGCACCGCG CAAGGAAGGC GCGGCCAGGG GCGGCCGCAA GCCGGCCGCC AAGCGTGAAG GTGCACCCAA GGGCGCGCAG GGCGGACAAG GCGGCCAGGG GCGGCGTGGC AGCCCGGCGA AAGCCGAGGG CGGCGCGGCG AAGGCCGAAG GCGATGCAGC GTCGCAGGAC GATCTGTTCG CCTATGTGAC GTCGCCGGCC TTCGACGCGG ACAACTCCGC GGGCGGCAGC GGCGTGCGTG CACCGATGCT GCGGCGCGGT CGCACCCAGC CGACGAACAA GCGGGTGCTG TCGCCGGACG ACGACGCGCC GAAGCTTCAC AAGGTGCTCG CGGAAGCGGG CATGGGCTCG CGTCGCGAAA TGGAAGAGCT GATCGTCGCC GGCCGCGTGT CGGTGAACGG TGAGCCTGCG CACATCGGCC AGCGCATCAT GCCGACCGAC CAGGTCCGCA TCAACGGCAA GCCGGTCAAG CGCAAGCTGC CGAACAAGCC GCCGCGCGTG CTGCTGTACC ACAAGCCGAC GGGCGAGATC GTCAGCCATG CGGATCCGGA AGGCCGTCCG TCGGTGTTCG ATCGCCTGCC GCCGATGAAG ACGGCGAAAT GGCTCGCGGT GGGCCGCCTC GACTTCAACA CCGAAGGTCT GCTGATGCTG ACCACGTCCG GCGATCTCGC GAACCGCTTC ATGCATCCGC GTTATAGCGT CGAGCGCGAG TATGCGGTGC GTGTCGTCGG CGAGTTGTCC GAAGGCATGC GGCAGAAGCT GCTGCATGGC GTCGAGCTCG ATGACGGCCC GGCGAACTTC CTGCGCATCC GCGACGGCGG CGGCGAAGGC ACGAACCACT GGTATCACGT CGCGTTGGCC GAAGGCCGTA ACCGCGAAGT GCGCCGTATG TTCGAAGCGG CCGGCCTGAT GGTGAGCCGC CTGATCCGCA CGCGCCACGG CCCGATCCCG CTGCCGCGCG GCCTGAAGCG CGGTCGTTGG GAAGAGCTCG ACGAGGCGCA GGTGCGCAAG CTGATGGCGA CCGTCGGCCT GAAGGCGCCG TCCGAGGAAA AGGGCAAGCG CGGTGGCAGT GGGCCGGCCG AGCGCCGCCA GCCGGATCCG ATGCAGACGT CGATGGGCTT CATCAGCCGC GAGCCGGTGC TGACCACGCA TGGTCAACTC GACCAGCCGC GTCGCGGCGG CGGTCGGCGC GGCGGCCCCG GCCTGCCGGG CCTGAGCGGC TACGGCAGCC TGCCGGTTTC GCCGTCGGGC CATGGCAATC GCTCGGGTGG CGGTCGCGAT GTCGACGGCA ATCGCGCGTC GTATGGCGCC GGTCCCAAGC GTGAAGGCGG CGCGGGCGCC AAGCGTGGCG GCAGCAAGGG CGGCGGTAAC CGCAACCCGA ACGGCAATCG CGCCGAAGGC GGCGGCAACG CCGGTGGTGG TGCACGCGGC GGTCAGCGCC CGCAGCGCAA TCGCTCGCGC GGTCGCTGA
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Protein sequence | MTDIHDIESS APAAQAARAD DAPEQDAPAA GGDERPRRGL RRGPRSLIAR RRAAAKSKGA EGESQDGEGA DAPPAEAAEA QPARAPRKEG AARGGRKPAA KREGAPKGAQ GGQGGQGRRG SPAKAEGGAA KAEGDAASQD DLFAYVTSPA FDADNSAGGS GVRAPMLRRG RTQPTNKRVL SPDDDAPKLH KVLAEAGMGS RREMEELIVA GRVSVNGEPA HIGQRIMPTD QVRINGKPVK RKLPNKPPRV LLYHKPTGEI VSHADPEGRP SVFDRLPPMK TAKWLAVGRL DFNTEGLLML TTSGDLANRF MHPRYSVERE YAVRVVGELS EGMRQKLLHG VELDDGPANF LRIRDGGGEG TNHWYHVALA EGRNREVRRM FEAAGLMVSR LIRTRHGPIP LPRGLKRGRW EELDEAQVRK LMATVGLKAP SEEKGKRGGS GPAERRQPDP MQTSMGFISR EPVLTTHGQL DQPRRGGGRR GGPGLPGLSG YGSLPVSPSG HGNRSGGGRD VDGNRASYGA GPKREGGAGA KRGGSKGGGN RNPNGNRAEG GGNAGGGARG GQRPQRNRSR GR
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