| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1333 |
|---|
| Symbol | |
|---|
| ID | 6177680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1478209 |
|---|
| End bp | 1479147 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641681088 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001808037 |
|---|
| Protein GI | 172060385 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0102274 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCACGCGT TCGCGCTCCA GGCGTTCAAC GGCCTCAGCT ACGGGTTGTT GCTGTTCATG
CTGTCGGCCG GCCTGACGCT GATCTTCAGC GTGCAGGGCG TGCTCAACTT CGCGCATGCG
AGCTTCTACA TGCTCGGCGC ATACGTCGGC TACAGCATCG CGGCCGGTGC GGGTTTCTGG
CCCGCGCTCG TGCTCGCGCC GCTCGCCGTC GGCCTGCTGG GCGCCGGCTG CGAGCGCTGG
CTGCTGCGCC GCGTGCAGGC GCGCGGCGGC CACACGAGCG AACTGCTGCT GACCTTCGGC
CTCGCGTACC TGATCGGCGA GGGCGCGAAA CTCGTATGGG GCCTCACGCC GCTGCCGGCC
CCGATGCCGC CGCTGTTCGA CGGCGCACCC GTGACCGCGT TCGGCCTCGC GCTGCCGCGC
TACCGGCTCT TCATGATGGC GATGTCCGCG GCGATGCTGA TCGCGCTCGG CGCGCTGCTG
CGCGCGTCGC GCATCGGGCT CGTCGTGCGT GCCGCACTCA CGCACCGCGC GGCCGTCGAA
GCGCTCGGTT ACGACGTGCC GCGCGTGATG ACGGGCCTGT TCGGCGCGGG CACCGCACTC
GCGGCGCTGG CCGGCGTGAT CGGCGCGCCG CTCGCGGTGA TCGAACCGGC GCTGGCCGAG
ACGGTCGGGT CGGTGGTGTT CGCGGTCGTC GTGATCGGCG GGCTCGGCTC GCTCGGCGGC
GCGTTCGTCG CGTCGCTCGC GGTCGGCTTC GCGCAGACCT TCGCGGCGTC CAGCGACACG
TCGCTGCGCG ACCTCGCGCA ACGGGCGGGC GTCGCGCTGC CCGACAGCGT CGCGGCCGTA
TCGATCGCAC AACTCGCGCC GCTGGTCCCG TATCTGCTGC TCGTCGCGGT GCTGGTCGCC
CGTCCGCGCG GATTGTTCGG CGAGCGTGTC GATGGATAG
|
|---|
| Protein sequence | MHAFALQAFN GLSYGLLLFM LSAGLTLIFS VQGVLNFAHA SFYMLGAYVG YSIAAGAGFW
PALVLAPLAV GLLGAGCERW LLRRVQARGG HTSELLLTFG LAYLIGEGAK LVWGLTPLPA
PMPPLFDGAP VTAFGLALPR YRLFMMAMSA AMLIALGALL RASRIGLVVR AALTHRAAVE
ALGYDVPRVM TGLFGAGTAL AALAGVIGAP LAVIEPALAE TVGSVVFAVV VIGGLGSLGG
AFVASLAVGF AQTFAASSDT SLRDLAQRAG VALPDSVAAV SIAQLAPLVP YLLLVAVLVA
RPRGLFGERV DG
|
|---|
| |