| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1281 |
|---|
| Symbol | |
|---|
| ID | 6178026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1416030 |
|---|
| End bp | 1418561 |
|---|
| Gene Length | 2532 bp |
|---|
| Protein Length | 843 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641681039 |
|---|
| Product | type VI secretion system Vgr family protein |
|---|
| Protein accession | YP_001807988 |
|---|
| Protein GI | 172060336 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.435024 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.300855 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCATA CCGCACTTTA TAAGACATTG CGTCTGGGCG ACGCGCAATA CAATCGTCTT
GTCAAACTGG ACACGCCACT CGGCGTCGAC TGGTTACTGC CTCTGTACGT TAAAGGAACG
GCCAGATTAG GACGCGACTA TGAATTCGTG ATCGACGTCG TGTCGCCGCG CGGTGGCCAG
ATCGAACTCA AGGCGCTGCT GGCCAAGCCG GTGACGCTCT GGATTCAGCA GGTCGACGGT
ACGTACATGC CGATTCACGG TTACGTTCAC CGCTTCAGCC GGCTGGGATC CGATGGCCCG
CTCACGTACT ACAAGCTGGC CTTTTCCTCG TGGCTTTACT TCCTGTGCCT GCGTCGCGAC
ATGCGCGACT GGCAGGAGCA GAACGGTGAA CAGATTCTCA CCGACGTATT CAACGAGCAT
GCGCAGGCAC GCGGAGCGTT CCGCTTCGAC CTGCATGGTG CGTTACCGTC GTATTCGAAT
CGCGTGCAAT GGGAATACGA TCTGAATTTC GTCCACCGGA GCATGGAAGA GGCGGGTGTA
TTTCCCTACT TTGAACAAGC GGACGACGGC CGATCCCACA CGATGGTCGT GACGGACGAC
GCCTACTTCG TTCCGCCGCT CAGGCAACCG GTCGTCGAGT TCGGCCGCAT GGAAATCGGC
GGCGAGCTGG ACGGATTCGC TCAATGGAAG GAACAGCTTC AGATCGAGAG TGCGCAACTG
ACGTCGCGCT CGTTCGACTA CAAGCGGCCC GATCTTCCCC GGCAGGTTCA AGGCGTGACC
GACGTCCACG GCAATTTGCC GACCGACGGC GAGGTCTACG ACTATCCGGG TGCCTACATG
TGGTCCGATC GGGAGCAGGG CGAACGCCTC GCGCGGATTC GTCTTGAAGA GAAGATGTCG
CGAATGAAGC GCTTTCAAGG TGTGGGCGGC TTGCGCTGCG CGATGCCGGG AAGGCGTTTC
GAACTTCGCG GTCATCCGGT TCACGATGCG GGCAACCAGG CCGATCGAGA GTTCGTGCTG
CTTGGAGTCG ACTGGTTGAT ATGCAACAAC GTGCCGGGTC TCGATGGTGT GGAGGCCTTT
CCCGATGGGC TGGCTGCCGA GGTTTCCGAG GCGAAGGCCG GAGCGACCGT GCGTCATGCG
GACGGCAGTG AAGGCTTCTT TCAGGTGAAG GTCGAGGCAC AGCCGCGCAA CGTTCCGTTT
CGCAGTCCGT TCGAGCACAA GAAGCCGGTC ATGCAGTTGC AGAACGCAAT CGTTGCCGGA
CCGGGTGGTG AAGAGGTGTA CACCGACTCG CTGAATCGCG TGAAGGTGTG GTTTCACTGG
AACCGCCGCA ATGACCAGGA CGAACGCGCG TCGTGTTGGG TGCGGCCGAC TTTTCTCGAT
GCCGGTGCGA ACCGCGGCGG CATCCAGCCA CTGCGCAAGG GCGATGAGGT CGTCGTCGGT
TTCATGGAGG GCGATTGCGA CCGGCCCGTC ATCATTGCAA GGATGTACGG TGGCGCGACC
CAACCGGTGT GGCACTCGAA CGGACTGCTG TCGGGCTACC GGTCGCGCGA GTACGGCGGG
ACGGGCTACA ACCAGCTCGT CATGGACGAC TCGACGCAGC AGAATCGCGT TCACCTCTAT
TCCAGCAGCT ATCAGTCTCA TCTGCATCTC GGCTACCTGA TCCAGCATAC GGACAATGCA
CGCGGCACAT TCCTCGGCAA TGGCTTCGAT CTCAAATCGG ACGCGTATGG CGCCATTCGT
GCGGGGCAGG GGCTCTTCGT TTCGACGCAT TCGGCGACGG CTCACCAGCC TCTGAACGTG
ACTGCCGCGA CCGAGCAATT GGCGAGTGCG GAGAGCGTGG TGGAACTGAC GTCCCAGGCG
AGTGCGGCAA ATCAGGCCGA GAGCCTGGAC GAAGGGCACG ACGCGCTGAA GCGATTCACC
GATGCAACGC AGTACAACGT GGCGGGTGGC GCAGGCAGCG GCGGTCGAAC GGGAGGTGGC
GGCACGGGTA GCGCAAACGG GTTCTCGTCG CCGATCATGC TGATTGCGAG CCCCGCGGGC
GTGGGCGTGT CCACGCAGGA CTCGGCGCAG CTCACCGCGA ACCAGCAAGT CAATATCGTC
AGCGGCAGAA GTACGCACGT CGCCGCCGGG AAATCGCTGA TCGCGAGCGT GATGGAAAAG
ATCAGCTTGT TTGCTCAGAA CGCGGGGATC AAGCTCTTCG CCGCCAAGGG GAAGGTCGAG
ATTCAGGCGC AGAGCGACGA GATGAAGCTT GCGGCGCTCA ACGACGTGAC GATCACGAGT
TCGAGCGGGC GTGTCGTGAT CTCCGCGGAA AAGGAGATCT GGATCGGTGC CGGCGGCTCC
TATATCAAGA TCGCGCCCGA CCTGATCGAG AATGGCACGA GCGGCCAGAT CCTCGAGAAA
TGTGCATCGT GGGACAAGCC CGGTGCGTCA TCGATGCGCC TGCCGTCGCC GATTGCGAGT
GTACAGAAAG GGTGCGCGTG GAAGACGGCG TCGGCGGCGG CCGACAGTGC GTCGAGCGTC
GTGCTGGAGT AG
|
|---|
| Protein sequence | MGHTALYKTL RLGDAQYNRL VKLDTPLGVD WLLPLYVKGT ARLGRDYEFV IDVVSPRGGQ
IELKALLAKP VTLWIQQVDG TYMPIHGYVH RFSRLGSDGP LTYYKLAFSS WLYFLCLRRD
MRDWQEQNGE QILTDVFNEH AQARGAFRFD LHGALPSYSN RVQWEYDLNF VHRSMEEAGV
FPYFEQADDG RSHTMVVTDD AYFVPPLRQP VVEFGRMEIG GELDGFAQWK EQLQIESAQL
TSRSFDYKRP DLPRQVQGVT DVHGNLPTDG EVYDYPGAYM WSDREQGERL ARIRLEEKMS
RMKRFQGVGG LRCAMPGRRF ELRGHPVHDA GNQADREFVL LGVDWLICNN VPGLDGVEAF
PDGLAAEVSE AKAGATVRHA DGSEGFFQVK VEAQPRNVPF RSPFEHKKPV MQLQNAIVAG
PGGEEVYTDS LNRVKVWFHW NRRNDQDERA SCWVRPTFLD AGANRGGIQP LRKGDEVVVG
FMEGDCDRPV IIARMYGGAT QPVWHSNGLL SGYRSREYGG TGYNQLVMDD STQQNRVHLY
SSSYQSHLHL GYLIQHTDNA RGTFLGNGFD LKSDAYGAIR AGQGLFVSTH SATAHQPLNV
TAATEQLASA ESVVELTSQA SAANQAESLD EGHDALKRFT DATQYNVAGG AGSGGRTGGG
GTGSANGFSS PIMLIASPAG VGVSTQDSAQ LTANQQVNIV SGRSTHVAAG KSLIASVMEK
ISLFAQNAGI KLFAAKGKVE IQAQSDEMKL AALNDVTITS SSGRVVISAE KEIWIGAGGS
YIKIAPDLIE NGTSGQILEK CASWDKPGAS SMRLPSPIAS VQKGCAWKTA SAAADSASSV
VLE
|
|---|
| |