| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1186 |
|---|
| Symbol | |
|---|
| ID | 6178625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1309988 |
|---|
| End bp | 1311883 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641680942 |
|---|
| Product | ATP-dependent metalloprotease FtsH |
|---|
| Protein accession | YP_001807893 |
|---|
| Protein GI | 172060241 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.21079 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAACAACA ATATGTTTTC GAAGGCAGCA GTGTGGCTGG TGATCGCACT GGTGCTGTTT
ACGGTGTTCA AGCAGTTCGA CAAGCCCCGC GTCCAGGAAG GTGTGTCCTA TTCGCAGTTC
ATGGACGACG CCAAGAACGG CAAGGTCAAG AACGTCATCG TGCAGGGGCG CAACCTCACC
GTCACTCCGT CTGATGGCCA GAAATACCAG ATCGTGTCGC CCGGCGACAT CTGGATGGTC
GGTGACCTGA TGAAGTACGG CGTGCAGGTC AGCGGCAAGG CGGACGACGA GCCGAACGCA
CTGATGTCCG CGCTGTATTA CCTCGGGCCG ACGATCCTGA TCATCGTGTT CTGGTTCTAC
ATGATGAGGC AGATGCAGGG GGGCGGCAAA GGCGGCGCAT TCTCGTTCGG GAAATCGCGC
GCGCGGCTGA TCGACGAGAA CAACAACGCG GTCAACTTCT CCGACGTCGC GGGCTGCGAC
GAAGCGAAGG AAGAAGTGTC CGAGCTCGTC GACTTCCTGC GTGATCCGCA GAAATTCCAG
AAGCTGGGCG GGCGCATCCC GCGCGGCGTG CTGCTCGTCG GCCCTCCGGG TACCGGCAAG
ACGCTGCTCG CCCGTGCGAT CGCCGGTGAA GCGAAGGTGC CGTTCTTCAG CATCTCGGGT
TCTGATTTCG TCGAAATGTT CGTCGGTGTC GGCGCGGCCC GTGTGCGCGA CATGTTCGAG
CAGGCGAAGA AGCACGCACC GTGCATCGTG TTCATCGACG AAATCGACGC GGTCGGTCGT
CATCGCGGCG CCGGCATGGG CGGCGGCAAC GACGAGCGCG AGCAGACGCT GAACCAGATG
CTGGTCGAGA TGGACGGCTT CGAGGCGAAC TCCGGCGTGA TCGTGATCGC CGCGACCAAC
CGTTCCGACG TGCTCGACAA GGCGCTGCTG CGTCCGGGGC GTTTCGACCG CCAGGTCTAT
GTCGGCCTGC CGGACATCCG CGGCCGCGAG CAGATCATGC GCGTGCACCT GCGCAAGGTG
CCGATCGCGA ACGACGTCGA TGCAGCGGTC ATCGCGCGCG GCACGCCGGG TTTCTCGGGC
GCCGATCTCG CGAACCTCGT GAACGAAGCG GCGCTGTTTG CCGCACGTCG CGGCAAGCGC
ATCGTCGAGA TGCAGGATTT CGAGGACGCG AAGGACAAGA TCTTCATGGG TCCGGAGCGC
AAGTCGGCGG TGATTCGCGA AGAAGCGAAG CGCGCGACGG CTTACCACGA GTCGGGTCAC
GCGGTGATCG CGAAGCTGCT GCCGAAGGCC GACCCGGTAC ACAAGGTCAC GATCATCCCG
CGCGGCCGCG CGCTGGGCGT CACGTGGCAG CTGCCCGAGC ATGACAACGA GACGTACTCG
AAGGACTACC TGCTCGATCG CCTGGCGATC CTGTTCGGTG GCCGCGTGGC CGAGGAGCTG
TTCCTTAACC TGATCAGCAC CGGCGCGTCG GACGACTTCA ACAAGGCGAC GCAGACGGCA
CGCGCGATGG TGGCCCGTTT CGGCATGACC GACGCCCTCG GGCCGATGGT CTACGTCGAC
GACGAGAGCG ACAACGGTCC GTTCGGCCGC GGCTTCACGC GCACGATCTC GGAAGCGACG
CAGCAGAAGG TCGATGGTGA AATCCGTCGC GTGCTCGACG AACAGTACAA CCTTGCGCGC
CGCCTGCTCG AAGAGAACCG CGACAAGGTC GAGGCAATGA CGGCCGCACT GATGGAGTGG
GAAACGATCG ACGCCGATCA GATCAACGAC ATCATGGAAG GGCGTCCGCC GCGCTCGCCG
AAGAGCTCGC CGGCTGTCGG CGGCGACTCG TCGGGTGGTG GCACGACCGC CGAAGTGAAG
CCGGCCAACG CGCCGGCGCC TGCTTCGCCG GCCTGA
|
|---|
| Protein sequence | MNNNMFSKAA VWLVIALVLF TVFKQFDKPR VQEGVSYSQF MDDAKNGKVK NVIVQGRNLT
VTPSDGQKYQ IVSPGDIWMV GDLMKYGVQV SGKADDEPNA LMSALYYLGP TILIIVFWFY
MMRQMQGGGK GGAFSFGKSR ARLIDENNNA VNFSDVAGCD EAKEEVSELV DFLRDPQKFQ
KLGGRIPRGV LLVGPPGTGK TLLARAIAGE AKVPFFSISG SDFVEMFVGV GAARVRDMFE
QAKKHAPCIV FIDEIDAVGR HRGAGMGGGN DEREQTLNQM LVEMDGFEAN SGVIVIAATN
RSDVLDKALL RPGRFDRQVY VGLPDIRGRE QIMRVHLRKV PIANDVDAAV IARGTPGFSG
ADLANLVNEA ALFAARRGKR IVEMQDFEDA KDKIFMGPER KSAVIREEAK RATAYHESGH
AVIAKLLPKA DPVHKVTIIP RGRALGVTWQ LPEHDNETYS KDYLLDRLAI LFGGRVAEEL
FLNLISTGAS DDFNKATQTA RAMVARFGMT DALGPMVYVD DESDNGPFGR GFTRTISEAT
QQKVDGEIRR VLDEQYNLAR RLLEENRDKV EAMTAALMEW ETIDADQIND IMEGRPPRSP
KSSPAVGGDS SGGGTTAEVK PANAPAPASP A
|
|---|
| |