| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1150 |
|---|
| Symbol | |
|---|
| ID | 6176920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1276144 |
|---|
| End bp | 1277037 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641680906 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001807857 |
|---|
| Protein GI | 172060205 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.326355 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.337548 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAATT TTCGCCATCT GTACTATTTC TGGGTCGTCG TGAAGGAAGG CGGCTTCGCG
CGCGCCGCCG AGCGGCTCGG CATGGCCGTG CAGACGATCA GCGCGCAGGT CCGCGACCTG
GAGAAGTCGC TCGGCCACCA GTTGCTACGC CCGGCCGGGC GCGGCGTCAC GATGACCGAC
GCGGGCCAGG CCGCGTATGC ACGCGCCGAG GTCATCTTCG AGATGGGCCG GCTGATCCCC
GACGAGGTGC GCGCGGCGGC CAGCCAGCCG ACGGTTCGGC TTGCGGTCGG TCTCGCGGAC
GGGATCTCGA AGCTGGCCGC GCATGCGATC CTCGCGCCGG TGCTCGACAC GCCCACGCTT
CGGCTGCTGT GTCACGAGGG CGAGCACGAC GCGCTGCTCG CGGAACTGGC CCTGCATCAT
CTCGATCTCG TGCTGGCCGG ACAGGGCGCG CCTTCGGGGT CGAATCTGCG CGTGACGAGC
GAGCGGCTCG TCGCGTCGCC GGTCGACTGG TACGGCCCCG CGGCGCTTGT CACGCCCGCC
GCGCGGCAGC GCTTCCCCCA CTGCCTCGCC GAGCTGCCGG TGCTGCTGCC GACCGCCCAT
TCGGCGCTGC GCGCACGCTT GGACCTGTGG CTGGAACGGG AACGGATCGT GCCCCGCGTG
GCCGGGGAAT TCGAGGACAG CGCGCTGATG GCCGTGTTCG CGGCCCGCGG CCTCGGCGTG
TTTCCGCTCA GCGAACTCGG CGCGAACGAC GCGTCGCTGT TGCGCGGGCT GCGCCGGCTC
GGCCGTGCGG GTGACGTGAC CGAGGAAATC CACGCGATCC GCTCGCGGCG CGGCGAACAC
CATCCGCTCG TGTCGCAACT GCTCGCCGTC GCGCCGCCGG CGCCGGCCGG CTGA
|
|---|
| Protein sequence | MLNFRHLYYF WVVVKEGGFA RAAERLGMAV QTISAQVRDL EKSLGHQLLR PAGRGVTMTD
AGQAAYARAE VIFEMGRLIP DEVRAAASQP TVRLAVGLAD GISKLAAHAI LAPVLDTPTL
RLLCHEGEHD ALLAELALHH LDLVLAGQGA PSGSNLRVTS ERLVASPVDW YGPAALVTPA
ARQRFPHCLA ELPVLLPTAH SALRARLDLW LERERIVPRV AGEFEDSALM AVFAARGLGV
FPLSELGAND ASLLRGLRRL GRAGDVTEEI HAIRSRRGEH HPLVSQLLAV APPAPAG
|
|---|
| |