| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1096 |
|---|
| Symbol | |
|---|
| ID | 6177613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1201288 |
|---|
| End bp | 1203579 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641680852 |
|---|
| Product | protein of unknown function DUF893 YccS/YhfK |
|---|
| Protein accession | YP_001807803 |
|---|
| Protein GI | 172060151 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1289] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0524683 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTATT CGGTCGAAAT CAGAAAGTTT CTCTACAGCC AGTACTTTTT CGGCGGCCTG
CGGATCGCGG TCGGCGTGTC GCTGCCGGCC GTACTGTGCC TGATCGTGTT TCACAACCGG
GAGCTCGGCT TCACGATCTC GACCGGCGCG CTCGGCGCGT GCGTCGTCGA CATGCCGGGC
CCGCTGAAGT ACAAGCACAA CGAAATGCTC GCGTGCAGCG TGATCGGCTT CCTGGCCGCG
CTCGCGACCG GCCTCGCCAC GCCGAACATC TTCGGGCTGT GGCTGACGAT CGTGCCGCTC
ACGTTCGTGC TGTCGCTGAT CGTCGTCTAC GGCAATCGCT GGCCGCAGAT CAGCTTCGCG
ACGCTGTTCA TGATGGTGAT GACGCTCGAG GAGAAGTTCA CGCCGCTGGA GGCGTTCGTC
AACGCGGGCT GGATTCTCGC GGGCGGCCTC TGGTACACGT ACTGGGCGAC GCTCGTGTCG
CAATGGCAGG CGCGCCGGAT CGAACAGCAG GCGCTTGCCG AAAGCCTGTT CGCCTGCGCC
GACTACCTGC TCGCGCGCGC GCAGTTCTAC GATCTCGACG CCGATCTCGA CGAGTGCTAC
CGCGACCTCG TCGCGAAGCA GATCACCGCG GTCGAAACGC AGGAAACCGC GCGCGACATC
GTGTTGCGCA ATCTGCCGAA GCTGCGTCGC GGCAAGCTCG ATCCCGGCCG CGCGACGATG
TACAACCTGT TCATCAACAG CGTCGACCTG CACGAGCTGT TCGTTGGCGC GCACACCGAC
TATCCGCTCG TGCGTAACAC CTTCGGCGGC TCGGATCTCA TCATTTTCTA CCGCGACCTG
ATCCGCAAGG CAGCCGCCGA TCTCGAGCAG ATCGGCCTCG CGGTGCTCGA AAACCGCGCG
CCGCATTCTC GAATCAGCGT GAAGGCCGAA CTGCGCGCGA TCGAGTACGA GATCGAGCTG
ATGCGCAAGA AGAACTTCCC AGCCAGCAAT GCGGAAGCGT ACGCGGCCGT GCTCGCGACG
TTCCGGCGCA TCTGGAGCGC GACGCGCCTG ATCGATCGGA TGCGCCGCAA CCTGTCGGGC
CATGCCGACC CGCAGCAGAT GGAACTGAAG ATCGACAAGG CGCTCACGCG CTTCCTGCAG
CGGCGCCGGA TGTCGCCGCT GCTGATCTTC TCGAACCTGA ACATGCGCTC GCCGAGCTTT
CGTCACGCAC TGCGTGTGAC GATCGCGGTG GCGGTCGGCT TCTGGCTCGG CCGGCTGCTG
CCGCTCACGA ACGCTTACTG GATCGTGATG ACGACCATCA TCATCCTGAA GCCCGGCTAC
TCGCTCACCA AGCAGCGCAA TGCGCAGCGT ATCGTCGGCA CGCTGATCGG CTGCGCGGCG
AGCATCGCGC TGATCTACAC GGTGAAGGAG CCGCACCTGC TGATCGCGAT CATGTTCGGC
TCGATGGTGA TGAGCTACAG CCTGCTGCTG TTCAACTACG CGGCGAGCGT CGTGTTCACG
TCGTCGTACG TGCTGCTGAT GTTTCACCTG CTCGCGCCGG GCAGCATGCG GATCATCGGC
GAGCGCGCGA TCGACACCGT GGTCGGCTGC ATGATCGCGA TCGCCGCGAG CCGCCTGTTC
CCGTACTGGG AATACCGGCT GATGGGCAAG CTCGTCACCG ACATGCTGAC GTCGACCCGC
AAGTATTTCG AGGCCGTGTG GCGCGCCGGA CGCGACGCAT CGCCGCCACC CGTGCCGACT
GCCGACGGCG CGGCGGTCGT GCCGGTCGTC GCCGCGGCGA TCGAAGCGCC CACCACCGCC
CTCGACGACG ACTACCGCTA CCGCCTCGCG CGCAAGGACG TGCATATCGC GTTCGCGAAC
CTCGGCCAGG CGTTCCAGCG GATGATGATC GAGCCGAAGG CGCATCAGCG CTTCGTGCCG
GAGCTGAACG ACCTGCTCGT GCAGACGCAC GTCCTCGGCG CGCAGATCAC CGCCGCCGCG
CCGCTGATCC GCAGCGCATG CGCGGCCGAC GAGACCCTCG TCCACGACGA CGCGCTGCAC
CGCGGCCTGT CCGCCGTGCT GGAGAACCTC GAGAAGGCGG AAGCCGGCGA GCCGCCGCCG
GCCGACCGGC TCGATGCGAC GAAGCAGATC ACGCGCGACC TCGACGCGAT GGTCGTGTCC
GCGGAAAAAT CCGACGCGGT GGGCGCCGAG CTCACGCACG ACCTGAAGGT GCTCGCGCAC
CAGTGCAAGC AGATGCTCGC GTCGTCGTTG CTGATCCGCA AGGACGCGAG CGTGATCCGC
CTGCCTGCAT GA
|
|---|
| Protein sequence | MRYSVEIRKF LYSQYFFGGL RIAVGVSLPA VLCLIVFHNR ELGFTISTGA LGACVVDMPG
PLKYKHNEML ACSVIGFLAA LATGLATPNI FGLWLTIVPL TFVLSLIVVY GNRWPQISFA
TLFMMVMTLE EKFTPLEAFV NAGWILAGGL WYTYWATLVS QWQARRIEQQ ALAESLFACA
DYLLARAQFY DLDADLDECY RDLVAKQITA VETQETARDI VLRNLPKLRR GKLDPGRATM
YNLFINSVDL HELFVGAHTD YPLVRNTFGG SDLIIFYRDL IRKAAADLEQ IGLAVLENRA
PHSRISVKAE LRAIEYEIEL MRKKNFPASN AEAYAAVLAT FRRIWSATRL IDRMRRNLSG
HADPQQMELK IDKALTRFLQ RRRMSPLLIF SNLNMRSPSF RHALRVTIAV AVGFWLGRLL
PLTNAYWIVM TTIIILKPGY SLTKQRNAQR IVGTLIGCAA SIALIYTVKE PHLLIAIMFG
SMVMSYSLLL FNYAASVVFT SSYVLLMFHL LAPGSMRIIG ERAIDTVVGC MIAIAASRLF
PYWEYRLMGK LVTDMLTSTR KYFEAVWRAG RDASPPPVPT ADGAAVVPVV AAAIEAPTTA
LDDDYRYRLA RKDVHIAFAN LGQAFQRMMI EPKAHQRFVP ELNDLLVQTH VLGAQITAAA
PLIRSACAAD ETLVHDDALH RGLSAVLENL EKAEAGEPPP ADRLDATKQI TRDLDAMVVS
AEKSDAVGAE LTHDLKVLAH QCKQMLASSL LIRKDASVIR LPA
|
|---|
| |