| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1080 |
|---|
| Symbol | |
|---|
| ID | 6177891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1183440 |
|---|
| End bp | 1184813 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641680836 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001807787 |
|---|
| Protein GI | 172060135 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACC AACAAAAGCC CACGCCCCCT TCGAAGGATC CCGCCTCCCC TGCCGCCCGT
CGCCCGCGCC GCACGCTGGT GATCGGGACG CTCGCAGTCG TCATCGGCGG CCTGCTGTGG
TGGCACCCGT GGAGCCGCAC GCCGGCCGGC ACGCAGGCCG CAGGCAGCGC GGCCTCCGGT
GCGAGCGCCG GCGGCGGCCA TCGCGGCCGC GGCGGCCCGG CCGCGATGGC GAACATTCCG
CAGCCCGTGT CGGTCGCGAC CGCGACGCAA GGCGAGATGC CGATCGTGCT GTCCGCGCTC
GGCACCGTGA CGCCGCTCGC GAACGTGACG GTCAAGACGC AGCTGTCGGG CTATCTGCAG
TCCGTCGCGT TCCAGGAAGG CCAGCTCGTC AAGAAGGGCG ACCTGCTCGC GCAGATCGAC
CCGCGTCCGT ACCAGGTCGC GCTCGAAAAC GCCGAAGGCA CGCACGCCCG CGACGCGGCA
TTGCTCGCGA CGGCCCGCCT CGACCTGAAG CGCTACCAGA CACTGCTGTC GCAGGACTCG
ATCGCATCGC AGACGGTCGA CACGCAGGCG TCGCTCGTCA AGCAATACGA AGGAACGGTG
AAGACCGACC AGGCGGCGAT CGATTCCGCG AAGCTGAACC TCACGTACGC ACGCATCACG
GCGCCGGTGT CGGGCCGCGT CGGCCTGCGC CAGGTCGACC CCGGCAACTA CGTGACGGCG
GGCGACACGA ACGGCATCGT CGTGATCACG CAGATGCAGC CGATGAGCGT GATCTTCACG
ACGTCGGAAG ACAACCTGTC GCAGATCCTC AAGCAGGTGA ACGCGGGCAA GAAGCTGTCG
GTCACCGCGT ACAACCGCAA CAACACGGTA CCGCTCGAGA CGGGCTCGCT CGAAACGCTC
GACAACCAGA TCGACACGAG CACCGGCACG GTCAAGCTGC GCGCGACGTT CGATAACAAG
GAAGGCCTGC TGTTCCCGAA TCAGTTCGTG AACACGCGCC TGCTCGTCGA CGTGTTGCGC
AATGCGACGA TCGTGCCGAC GGCCGCGGTG CTGACGGGCT CGATCGGCCA GTTCGTGTAC
ATCGTGAAAC CCGACAACAC CGTGACGGTG CGCAAGGTCA CGATCGGCCC GGTCGACGGC
GAACGCACGA GCATCGTCAG CGGCGTCGCG CTCGGCGAGC GCGTGGTCAC CGACGGCTCC
GACCGGCTGC GCGAAGGCGC GAAGATCACG ATCCCGGCCG ACAAACCCAA AGGCGCGTCG
GGCGCGCACG GCGCCGGCGC GGCGTCGGGT GCATCGGGTG CATCGGGTAC GGCCGGCCAC
CGCGGCGGAC ACAAGCACGG CGCGTCGCAG GCCGCGGCCC CCGCGGTCCA GTAA
|
|---|
| Protein sequence | MDNQQKPTPP SKDPASPAAR RPRRTLVIGT LAVVIGGLLW WHPWSRTPAG TQAAGSAASG
ASAGGGHRGR GGPAAMANIP QPVSVATATQ GEMPIVLSAL GTVTPLANVT VKTQLSGYLQ
SVAFQEGQLV KKGDLLAQID PRPYQVALEN AEGTHARDAA LLATARLDLK RYQTLLSQDS
IASQTVDTQA SLVKQYEGTV KTDQAAIDSA KLNLTYARIT APVSGRVGLR QVDPGNYVTA
GDTNGIVVIT QMQPMSVIFT TSEDNLSQIL KQVNAGKKLS VTAYNRNNTV PLETGSLETL
DNQIDTSTGT VKLRATFDNK EGLLFPNQFV NTRLLVDVLR NATIVPTAAV LTGSIGQFVY
IVKPDNTVTV RKVTIGPVDG ERTSIVSGVA LGERVVTDGS DRLREGAKIT IPADKPKGAS
GAHGAGAASG ASGASGTAGH RGGHKHGASQ AAAPAVQ
|
|---|
| |