Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1045 |
Symbol | |
ID | 6176481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 1135860 |
End bp | 1137212 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641680801 |
Product | glucarate dehydratase |
Protein accession | YP_001807752 |
Protein GI | 172060100 |
COG category | [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
TIGRFAM ID | [TIGR03247] glucarate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.567238 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCCG TCACTGCCTC GCCTTCCCAC GACACGCCGC GCATCGTCGA GCTGCAAGCC ATTCCGGTCG CCGGCCACGA CAGCATGCTG CTCAACCTGA GCGGCGCGCA CGGTCCGTTC TTCACCCGCA ACCTCGTGAT CCTGAAGGAC AGCGCGGGCC GGACCGGCGT CGGCGAAGTG CCGGGCGGCG AAAGCATCCG CCGCACGCTC GAAGATGCGC GCGCGCTCGT CGTCGGCCAG CCGGTCGGCA ACTACCACGC GGTGCTCAAC GACGTGCGGC GCACCTTTGC CGATCGCGAC GTGAGCGGCC GCGGCCTGCA GACCTTCGAC CTGCGCACCA CGATCCACGC GGTCACCGCG CTCGAAGCCG CGCTGCTCGA CCTGCTCGGC CAGCATCTCG GCGTACCCGT GGCCGCGCTG CTCGGCGAAG GACAGCAGCG CGAGCGCGTC GAGATGCTCG GCTACCTGTT CTACGTCGGC GATCGCAGCA AGACCGCGCT GCCCTATCGC GACGGCCGCG GCGCGACCGA CGACTGGACC CGCGTGCGCG ACGAGGCCGC GCTGACGCCC GAGGCGGTCG TGCGCCTCGC CGAAGCCGCG CACGCGCGCT ACGGATTCAA CGACTTCAAG CTGAAGGGCG GCGTGTTCGA AGGCGCGCGC GAGGTCGAAG CCGTGACGGC GCTGGCCGAG CGTTTCCCCG AAGCGCGCGT GACGCTCGAT CCGAACGGCG CGTGGTCGCT CGACGAGGCC GTGCGGCTGT GCCGCGACCT GCACCACGTG CTCGCCTATG CGGAAGATCC GTGCGGCGCG GAGAACGGCT ACTCGGGCCG CGAGGTGATG GCCGAATTCC GCCGCTCGAC CGGGCTGCCG ACGGCCACCA ACATGATCGC GACCGACTGG CGCCAGATGG GCCACGCGGT GCAGCTGCAC GCCGTCGACA TCCCGCTCGC CGACCCGCAC TTCTGGACGA TGCAGGGCTC GGTGCGCGTC GCGCAGATGT GCCGCGACTG GGGCCTCACG TGGGGTTCGC ATTCGAACAA CCACTTCGAC GTGTCGCTCG CGATGTTCAC GCACGTCGCG GCCGCGGCGC CCGGGCAAGT CACCGCGATC GACACGCACT GGATCTGGCA GGACGGCGAA CGGCTCACGC GCGAACCGCT GAAGATCGAG AACGGGCTCG TGGAAGTGCC GAAGCGGCCG GGCCTCGGCC TCGACATCGA CATGGATGCG GTCGCGGTCG CGCACGAGCT GTACAAGCAG CACGGGCTCG GCGCGCGCGA CGATGCGGCG GCGATGCAGT ATCTGATTCC GGGTTGGACG TTCAACAACA AGCGCCCCTG CCTCGTGCGC TGA
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Protein sequence | MNAVTASPSH DTPRIVELQA IPVAGHDSML LNLSGAHGPF FTRNLVILKD SAGRTGVGEV PGGESIRRTL EDARALVVGQ PVGNYHAVLN DVRRTFADRD VSGRGLQTFD LRTTIHAVTA LEAALLDLLG QHLGVPVAAL LGEGQQRERV EMLGYLFYVG DRSKTALPYR DGRGATDDWT RVRDEAALTP EAVVRLAEAA HARYGFNDFK LKGGVFEGAR EVEAVTALAE RFPEARVTLD PNGAWSLDEA VRLCRDLHHV LAYAEDPCGA ENGYSGREVM AEFRRSTGLP TATNMIATDW RQMGHAVQLH AVDIPLADPH FWTMQGSVRV AQMCRDWGLT WGSHSNNHFD VSLAMFTHVA AAAPGQVTAI DTHWIWQDGE RLTREPLKIE NGLVEVPKRP GLGLDIDMDA VAVAHELYKQ HGLGARDDAA AMQYLIPGWT FNNKRPCLVR
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