| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0956 |
|---|
| Symbol | |
|---|
| ID | 6178685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1046496 |
|---|
| End bp | 1047437 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641680706 |
|---|
| Product | ribosome-associated GTPase |
|---|
| Protein accession | YP_001807663 |
|---|
| Protein GI | 172060011 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1162] Predicted GTPases |
|---|
| TIGRFAM ID | [TIGR00157] ribosome small subunit-dependent GTPase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.231895 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGC CGACCTCCCG CAAGCCGGCC CCGCGCGCAT CGGGCGCGCA GCGTGTCGAA
GGCCGCGTGA TCGCGGCGCA CGGGCGCCAC TACATCGTCG CGCCCGACGA CGGCGGCCCG
ATGCTGCAGT GCTTCCCGCG CGGCAAGAAA AGCGAGATCG CGGTCGGCGA CCGCGTCGTG
TACGAACAGG CATCGGCCGA CCAGGGCGTG ATCGTCGAGA TCGGCGAGCG GCGCAACCTG
CTGTACCGCT CCGACCAGTT CAAGTCGAAG CTGTTCGCGG CCAACCTCGA CCAGTTGCTG
ATCGTGCTCG CGACCGAGCC CTATTTCAGC GAGGATCTGC TTGGCCGCGC GCTGATCGCG
GCCGAAGCGA ACGAACTGAA GCCGCTCGTC GTGCTGAACA AGATCGACGT CGAAGCCGCG
CTGCCGGTCG CCCGCGAGCG CCTGGCGCCC TACCGCGCAC TCGGCTACGA CGTGCTCGAA
CTGTCGGTCA AGGGCTCGCC CGACGATGCG CGCGCGCAGC TGATGCCGCA CCTGGCCGGG
CACTCGACGA TCCTGCTCGG CCAATCCGGG ATGGGCAAGT CGACGCTCGT GAACCTGCTC
GTGCCCGATG CCGAGGCCGC GACCCGCGAA ATCTCGGCCG CGCTCAACAG CGGCCGCCAT
ACGACGACGT TCACGCGCCT CTACCCGCTC GAAGGCGGCG GCGCGCTGAT CGATTCGCCG
GGCTTCCAGG AGTTCGGCCT GTACCACCTG ACGGAGGGGC GCCTCGAGCG CGCCTTTCCG
GAATTCCGCC CGCTGCTCGC GGACTGCCGT TTCTATAATT GTCATCATCT GCACGAGCCC
GGCTGCGCGA TTCTCGAAGC CGTGGCCGAC GGCCGCATTG CGCCGTCGCG GCATGCGCTC
TACGCGCAGC TCGTGCACGA GGCGAGCCAG ATCGTCCGCT GA
|
|---|
| Protein sequence | MSRPTSRKPA PRASGAQRVE GRVIAAHGRH YIVAPDDGGP MLQCFPRGKK SEIAVGDRVV
YEQASADQGV IVEIGERRNL LYRSDQFKSK LFAANLDQLL IVLATEPYFS EDLLGRALIA
AEANELKPLV VLNKIDVEAA LPVARERLAP YRALGYDVLE LSVKGSPDDA RAQLMPHLAG
HSTILLGQSG MGKSTLVNLL VPDAEAATRE ISAALNSGRH TTTFTRLYPL EGGGALIDSP
GFQEFGLYHL TEGRLERAFP EFRPLLADCR FYNCHHLHEP GCAILEAVAD GRIAPSRHAL
YAQLVHEASQ IVR
|
|---|
| |