| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0725 |
|---|
| Symbol | |
|---|
| ID | 6178406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 809633 |
|---|
| End bp | 810568 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641680473 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001807437 |
|---|
| Protein GI | 172059785 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.576949 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCGT CCCTCTACGC CCCACCCGTC GACCATTCGA CCGCCCTTGC CGGCGGCGCG
ATGCCGTTCG GCCTGCAGTC GGTGTGCCGC ACGCTGGCCG AGGCGAACGC GACGCTCGAG
CGCTTCACGT GGCTCGGCGA CCATCTCGCG ATCGCCGAAT GGACGCGCAT CACCGACGAA
AGCGAGACGA TCTACGAACA GCCCGGCCAC CACACGTTGT CGTGCTATCT CGACGGCGGT
TACCGGACCG AGCGCGAACG CGTGCCGCGC TACGGCGCGC CGAGCCTGCT GTGCGCGCTG
CCGGGCGACC ATGAATCGCG CTGGTGGGTG CGCGGCGAGA TGCACTTCAT CCACCTGTAC
TTCCTGCCCG AGCACTTCAC GCAGCGCGCG ATCCGTGAAC TCGATCGCGA GCCGCGCGAG
CTGAAGCTCG CCGACCGCAC CTATTTCGAG GATGCGCGCG TGGCGGCCCA GTTCCGTTCG
CTCGCGCTGG AGCGCTGGGA CGATGCCGAC GGCCGGCTGC GCGCGAACGA GGCCGCGCAC
GACGTGCTGA GCCTGCTGCT GCGCGGCCAG AGCACGACAC GCACCGACGT GCCGTTCCGC
GGCGGGCTCG CGCCGGCCGT GCGCCGCCGC GTGCGCGACT ATATCGACAC CTATCTGTCG
CAGCCGCTGA CGCTCGGCGA ACTGGCGAAC GTCGCCGCGC TGTCCGAATA CCACTTCTCG
CGGATGTTCC GGCTGTCGTT CGGCCGTGCG CCGCACGCAT GGGTGGCCGA GCAGCGGCTC
GCGCGGGCGC GCCTGCTGCT GCGCACGACG GCGCTGCCGC TCGCGCAGGT CGCGGCCGAA
TGCGGCTACG CGAACGCCGG CCACTTCAGC CATCGCTTTC GCGACGCGCA CGGCACGACG
CCGAACGCGT ACCGGCGCGC GATGCAGGGC GGCTGA
|
|---|
| Protein sequence | MSSSLYAPPV DHSTALAGGA MPFGLQSVCR TLAEANATLE RFTWLGDHLA IAEWTRITDE
SETIYEQPGH HTLSCYLDGG YRTERERVPR YGAPSLLCAL PGDHESRWWV RGEMHFIHLY
FLPEHFTQRA IRELDREPRE LKLADRTYFE DARVAAQFRS LALERWDDAD GRLRANEAAH
DVLSLLLRGQ STTRTDVPFR GGLAPAVRRR VRDYIDTYLS QPLTLGELAN VAALSEYHFS
RMFRLSFGRA PHAWVAEQRL ARARLLLRTT ALPLAQVAAE CGYANAGHFS HRFRDAHGTT
PNAYRRAMQG G
|
|---|
| |