| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0690 |
|---|
| Symbol | |
|---|
| ID | 6176758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 777719 |
|---|
| End bp | 778669 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641680437 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001807402 |
|---|
| Protein GI | 172059750 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.301677 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCGT TGAGTCAACT GTTGTCGCTG GGCCGCAGCC ATGTCGAGCT CGACGTGCGC
TGCCTGCTCG ACGGCCCGTT CACGATGCCG CACGACCCGT TGCCGCCCGG CGAGGCGGCG
TTTCACCTGC TGCTGTCCGG AACGTGCCGG TTGCGCACGA CCGACGGGCG CACGTTGCGG
CTCGTCAACG GCGATTTCGT GCTGCTGCCC GCGGGCGACG CGCACGATTT GTCGGATGGA
GGCGCGGGCG GCGCCAGGTC GGTCGCGTTG CTGCGCGAAC CGCGCGCGGC AGGCGGCGCG
GTGCTGCCAG TCAAGTCGAA CCGCGATCCC GCGGATGAGG GCGAGGCGGG CGTCGACCTG
CTTTGCGGAC GCTTCGTCTA TGCACGCGGT GCCGGTGAAT TGCTGATGCG CACGCTGCCG
CGCGTGCTGC ACGTCGGGCT GCGAGAGGCG TCGTCGGGGC TTGCGTCGCT GCAACTGCTG
ACGAGCGTGC TGCGCGCGGA GGCATCGAAT GCGCAGCCGG GTGCGCGTGC GATCGTGAAC
GCGCTCGGAC AGGCGCTGCT CGCCTATGCG TTGCGCGCGT ACGGTCGCGA TGCGCGCGTG
CCGGCCGGCT GGCTCGCGCT GGCTGCCGAT ATGCGGCTCG GCCCGTCGGT CCAGGCTGTG
CTGCAGGCGC CGGCGAAACC GTGGACGGTC GAATCGCTCG GCGCGGCGTC GGCGATGTCG
CGCGCGACCT ATGCACGGCA TTTCCGCGAG AAGGCGGGGA TGAGCGTCGG CGCGTTCGTC
GCGCAGATCC GGATGATGCA TGCGTGCGCG CTGCTGCAGG ACACGCAGCG CGGGCAGGCG
GAGATCGGGC AGGCGGTCGG CTATCAGTCG GAGGCGGCGT TCGGCAAGGC GTTTCGCGCG
GTGCTCGGCA CGACGCCGGG GCGCTGGCGG CGCGCGCAGC GTGGTACGTG A
|
|---|
| Protein sequence | MDALSQLLSL GRSHVELDVR CLLDGPFTMP HDPLPPGEAA FHLLLSGTCR LRTTDGRTLR
LVNGDFVLLP AGDAHDLSDG GAGGARSVAL LREPRAAGGA VLPVKSNRDP ADEGEAGVDL
LCGRFVYARG AGELLMRTLP RVLHVGLREA SSGLASLQLL TSVLRAEASN AQPGARAIVN
ALGQALLAYA LRAYGRDARV PAGWLALAAD MRLGPSVQAV LQAPAKPWTV ESLGAASAMS
RATYARHFRE KAGMSVGAFV AQIRMMHACA LLQDTQRGQA EIGQAVGYQS EAAFGKAFRA
VLGTTPGRWR RAQRGT
|
|---|
| |