| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0565 |
|---|
| Symbol | |
|---|
| ID | 6178783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 636639 |
|---|
| End bp | 637175 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641680313 |
|---|
| Product | transposase IS3/IS911 family protein |
|---|
| Protein accession | YP_001807278 |
|---|
| Protein GI | 172059626 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2963] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.151149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.231454 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGT ACACGGAGCA GTTCAAGGTA TCCATTGCAG AGGAGTACGA GTCCGACCAC
GCTGGGTTCC GTGAGATGTC CAAGCGCCAC GGCGTCGATG AGGCGACGAT CCGCAAGTGG
GTGGCGGCCC ATCGCATACA TGGTCCGGCA GGCTTGAAGA AGAAGTGCGA GCGCTACAGC
GCAGAGTTCA AGTTGCTTGT ACTGCAGCAA ATGCGTAGCG AGGGGTTGTC AGCGCGTGAG
ACGGCTGCAC GCTTCAACAT TAGGAACCGT ACGGCCATCG GCCAGTGGAA ACGCCAGTAT
GATGAAGGCG GTATAGACGC ACTGTCGCCG CGCCAGCGGG GGCGCCCCAG AAAGATGCCC
AAGCCACCGA TCACGCCACC GCCGCTACCC GAGGACGATA CGCGCTCCCG ACAGGAACTA
CTCGACGAGT TGAACTTCCT GCGCATGGAG AACGCGTACC TAAAAAAGCT CGAAGCCTTG
GCTCAAGCGC AGCAGCGATC AGCGCAACGC AAAAAGCGCA AATCGTGCTC GAGCTAA
|
|---|
| Protein sequence | MSKYTEQFKV SIAEEYESDH AGFREMSKRH GVDEATIRKW VAAHRIHGPA GLKKKCERYS
AEFKLLVLQQ MRSEGLSARE TAARFNIRNR TAIGQWKRQY DEGGIDALSP RQRGRPRKMP
KPPITPPPLP EDDTRSRQEL LDELNFLRME NAYLKKLEAL AQAQQRSAQR KKRKSCSS
|
|---|
| |