Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0545 |
Symbol | |
ID | 6176541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 614847 |
End bp | 615626 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641680293 |
Product | short chain dehydrogenase |
Protein accession | YP_001807258 |
Protein GI | 172059606 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.074184 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGACGTC TCGCGGGCAA GGTCGCGGCG GTGACGGGCG CGGGCCGCGG GATCGGCGCC GCGATCGCGC AGGCGTTCGC GCGCGAGGGC GCGGCCGTCG CGCTCGTCGA CCTCGACTTC CCGCAGGCGC AGCGCACGGC GGCTGCGATC GCCGCCGCTA TCGACGGCGC GCGCGTGCTC GCGTTGCACG CGGACGTCGC GCGGCAGGAC TCGGTGCGCG ACGCGTTCGC GCAGACCGAA GCCGCGCTCG GCCCGCTCGA CGTGCTGGTG AACAACGCCG GCATCAACGT GTTCGCCGAT CCGCTGACGA TGACGGACGA CGACTGGCGC CGCTGCTTCG CGGTCGATCT CGACGGCGTG TGGCACGGCT GCCGCGCGGC GCTGCCCGGG ATGGTCGAAC GCGGTCGCGG CAGCATCGTG AACATCGCGT CGACGCATGC GTTCCGGATC ATCCCGGGCT GCTTTCCGTA CCCGGTCGCG AAACACGGCG TGCTGGGCCT CACGCGTGCG CTCGGCATCG AATACGCGGC GCGCAACGTG CGGATGAACG CGATCGCGCC CGGCTACATC GAGACGCAGC TGACGCGCGA CTGGTGGGAT GCGCAGGCCG ACCCGGCCGC GGCGCGCGCC GAGACGCTCG CGCTGCAGCC GATGAAGCGG ATCGGCAAAC CGGAGGAAGT CGCGATGACG GCCGTGTTCC TCGCGTCCGA CGAGGCGCCG TTCATCAATG CCGCGTGCAT CACCGTCGAT GGCGGACGCG CGGCGCTGTA CCACGATTGA
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Protein sequence | MGRLAGKVAA VTGAGRGIGA AIAQAFAREG AAVALVDLDF PQAQRTAAAI AAAIDGARVL ALHADVARQD SVRDAFAQTE AALGPLDVLV NNAGINVFAD PLTMTDDDWR RCFAVDLDGV WHGCRAALPG MVERGRGSIV NIASTHAFRI IPGCFPYPVA KHGVLGLTRA LGIEYAARNV RMNAIAPGYI ETQLTRDWWD AQADPAAARA ETLALQPMKR IGKPEEVAMT AVFLASDEAP FINAACITVD GGRAALYHD
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