| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0490 |
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| Symbol | ddl |
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| ID | 6177804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 556839 |
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| End bp | 557780 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641680237 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001807203 |
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| Protein GI | 172059551 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.107691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGGGA TCGATCCGAA ACGTTTCGGC AAGGTGGCAG TGTTGTTCGG CGGCGAATCC
GCCGAGCGCG AGGTGTCGCT CACCTCGGGC CGCCTCGTGC TGCAGGGCCT GCGCGACGCG
GGCATCGACG CGCATCCGTT CGACCCGGCC GAGCGGCCGC TGTCGGCGCT GAAGGATGAA
GGCTTCGTGC GCGCGTTCAA CGCGCTGCAC GGCGGCTATG GCGAGAACGG CCAGATCCAG
GGCGCGCTCG ATTTCTACGG GATTCGCTAC ACGGGCAGCG GCGTGCTCGG CTCGGCGCTT
GGTCTCGACA AGTTCCGCAC GAAGCTCGTG TGGCAGCAGA CGGGCGTGCC GACGCCGCCG
TTCGAGACGG TGATGCGCGG CGACGACTAC GCGGCGCGCG CGACGGACAT CGTCGCGAAG
CTCGGCCTGC CGCTGTTCGT GAAGCCGGCG AGCGAAGGCT CGAGCGTCGC GGTGCTGAAG
GTCAAGACGG CCGACGCGTT GCCCGCCGCA CTGTCGGAAG CCGCGACGCA CGACAAGATC
GTGATCGTCG AGAAGAGCAT CGAAGGCGGC GGCGAATACA CCGCGTGCAT CGCCGGCGAT
CTCGATCTCC CGCTGATCAA GATCGTGCCG GCGGGCGAGT TCTACGACTA CCACGCGAAG
TATGTCGCCA ACGATACGCA GTACCTGATT CCGTGCGGGC TGCCGGCGGA GCAGGAAACA
GAACTGAAGC GCATCGCGCG CCGCGCGTTC GACGTGCTCG GCTGCACCGA CTGGGGCCGC
GCGGATTTCA TGCTCGACGC CGCCGGCAAC GCGTATTTCC TGGAAGTGAA CACGGCCCCC
GGGATGACCG ACCATTCGCT GCCGCCGAAG GCCGCGCGCT CGATCGGCAT CGGCTATTCG
GAGCTGGTCG TGAAGGTGCT GTCGCTTACG CTCAACGACT GA
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| Protein sequence | MSGIDPKRFG KVAVLFGGES AEREVSLTSG RLVLQGLRDA GIDAHPFDPA ERPLSALKDE
GFVRAFNALH GGYGENGQIQ GALDFYGIRY TGSGVLGSAL GLDKFRTKLV WQQTGVPTPP
FETVMRGDDY AARATDIVAK LGLPLFVKPA SEGSSVAVLK VKTADALPAA LSEAATHDKI
VIVEKSIEGG GEYTACIAGD LDLPLIKIVP AGEFYDYHAK YVANDTQYLI PCGLPAEQET
ELKRIARRAF DVLGCTDWGR ADFMLDAAGN AYFLEVNTAP GMTDHSLPPK AARSIGIGYS
ELVVKVLSLT LND
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