| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0400 |
|---|
| Symbol | |
|---|
| ID | 6177679 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 448784 |
|---|
| End bp | 449392 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641680142 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001807113 |
|---|
| Protein GI | 172059461 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3521] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03352] type VI secretion lipoprotein, VC_A0113 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000206514 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGATCAA TGATTCGCCA TGCGCTGCCG CTGCTTGCCT GCGCGCTCCT GGCCGGGTGC
GCGGCCGCCC CGTTGCTCGG CTCTGCCGCG AGCGCCGTGC TGCAGGCTGC CGGCGTGGGC
AAGCCCGAAC TGCCGGATGC CCAGAAGCCC CCGCGCAACA TCGGGCTCAC GCTCGCCGCC
GCGTCCAACC TCAATGCCGC GAACGATCGC AAGCCGCTCG CATTAGTGGT AAGACTCTAC
GCGCTGAAGG ATCCGACGTC GTTCCAGCAG GCGCCGTTCG ACGCGTTCAC CGATCCGACC
AAGGAAAAGG CCGCGCTGGG CGCCGATCTG CTGAACGTGC GTGAAATCAC GCTGATTCCG
GGCCAGCGCT ATACCGCGAC CGAAAAGGTA TCGCGCGAAG CGCAGGCATT CGGCATCGTC
GCGCTGTTCC GCGATCCCGC CATCCAGCGA TGGAAACTGA CGTTCGACCC GGCGAAGTCG
GAGAAATCCG GCATAATCAT CGGCCTGCAT AATTGCGCGA TGACGGTGAC CGATGGCTCC
GTGATCGCCC CGCAACAAGG GGCGCCTTCG CAACCGCTGA ATTTGCTTTC GTCCGTCAGC
TGCGGTTAA
|
|---|
| Protein sequence | MRSMIRHALP LLACALLAGC AAAPLLGSAA SAVLQAAGVG KPELPDAQKP PRNIGLTLAA
ASNLNAANDR KPLALVVRLY ALKDPTSFQQ APFDAFTDPT KEKAALGADL LNVREITLIP
GQRYTATEKV SREAQAFGIV ALFRDPAIQR WKLTFDPAKS EKSGIIIGLH NCAMTVTDGS
VIAPQQGAPS QPLNLLSSVS CG
|
|---|
| |