Gene BamMC406_0293 details

Gene Information

• Locus tag: BamMC406_0293
• Symbol: rpsE
• ID: 6176761
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria MC40-6
• Kingdom: Bacteria
• Replicon accession: NC_010551
• Strand: +
• Start bp: 335918
• End bp: 336436
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 641680038
• Product: 30S ribosomal protein S5
• Protein accession: YP_001807010
• Protein GI: 172059358
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00000423701
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.0414454
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCAAAGA TGCAAGCGAA AGTTCAGGCT GACGAGCGCG ACGACGGCCT TCGCGAAAAG 
ATGATTTCGG TCAACCGCGT GACCAAGGTC GTGAAGGGTG GCCGTATTCT CGGCTTCGCC 
GCACTGACCG TGGTTGGCGA CGGCGATGGC CGCATCGGTA TGGGCAAGGG CAAGGCGAAG 
GAAGTGCCGG TCGCTGTCCA GAAGGCAATG GAACAAGCTC GCCGCAACAT GTTCAAGGTG 
CCGCTCAAGA ACGGCACGCT GCAGCACGAA GTGCACGGCA AGCATGGCGC ATCCGCTGTC 
CTCCTCGCTC CGGCGAAGGC AGGTACGGGT GTGATCGCCG GCGGCCCGAT GCGCGCAGTG 
TTCGACGTGA TGGGCGTTCA GAACGTCGTG GCGAAGAGCC ACGGTTCGAC GAACCCGTAC 
AACCTCGTTC GCGCCACGCT GGACGGTCTG CGCAAGCAGT CGACCCCGGC AGACATCGCG 
GCGAAGCGCG GCAAGTCCGT CGAAGATATT TTGGGCTAA 

 

Protein sequence

MAKMQAKVQA DERDDGLREK MISVNRVTKV VKGGRILGFA ALTVVGDGDG RIGMGKGKAK 
EVPVAVQKAM EQARRNMFKV PLKNGTLQHE VHGKHGASAV LLAPAKAGTG VIAGGPMRAV 
FDVMGVQNVV AKSHGSTNPY NLVRATLDGL RKQSTPADIA AKRGKSVEDI LG