Gene BamMC406_0152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0152 
Symbol 
ID6177436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp178749 
End bp180200 
Gene Length1452 bp 
Protein Length483 aa 
Translation table11 
GC content57% 
IMG OID641679887 
Productputative transcriptional regulator 
Protein accessionYP_001806869 
Protein GI172059217 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCTTG AGCGTGACAT TGCACTTGTC GACGAGCTGC GTTCGCACAC TAGCGAGTGC 
CAGTGGCTTG AATTCAAGAA AAACAACACC GACCACGAGA TGATCGGCAA ACGGTGCTCG
GCGCTGTCCA ACGCCGCGCG CATTGAAGGC AGAGATACCG CGTATATGCT CTGGGGTATC
GAGGATGAAA CCCATAATGT AGTGGGCACA TCTTTCGATC CGGAGTCTCA AAAAGTCGGC
GGAGTGGTGC TCCAATTGTG GCTAGCAAAC GCGTTGCAGC CGAGCATTAC TTTCAGTTTC
CGGACGATTG CTCACCCCGA GGGGTGCGTG GTTCTGTTGG AAATTCCGGC CGCTACGGGA
ACCCCCGTCA GCTACAATGG TATCCCCTAC GTGCGCATCG GAAGCGCAAC ACCCAAGCTC
ACGGAGTATC CCGAGCGCTA CCAGAAGCTC CTCGAGCGGA TGCAACCGTA TCGATGGGAG
CATGGCGTCG CAGCGCAGTA CATTAAGGGC GACGATGTGT TGGAATTGCT CGACTACAGC
CATTACTTTC GGCTTACGAA GCAACCGCTT CCCGACAACC GAAGCGGGAT ATTCGAGAAG
CTGGCAGCGG ACCGGTTGAT AGCTCGCGAT GTCAGCGACC GGTGGAACAT CACGAACCTC
GGTGCAGTGC TGTTTGCCAG TCGGCTCAGT GATTTTGATG CTGGTTTGGC ACGGAAAGCT
GTTCGCTTCG TCGCCTATGA AGGGAAGAAC CGCGCTGCAA CGGTCACGCA TCGCTTGGAC
GGAGAGAAGG GCTACGCCGT CGGGTTCGAA GGCCTCGTCA GTTTTCTGAA CGAGCTGTTG
CCGAAGAAGG AGCATATTGG TGCGCTCCGC GAAGCAGCCA TTGTGTTCCC GGAGCTAGCG
ATACGTGAGT TGGTCGCGAA CGCTTTAATT CACCAGGACA TGACGCTTAC TGGTGCAGGG
CCGCTGATCG AATTGTTTGA GGATCGAATC GAGATCAGTA ATCCTGGCGA ACCGCTGGTG
AAGCCAGAGC GCATGATTGA TTTGCCCCCG CGCTCGCGAA ATGAAGCCCT CGCCTCGCTG
ATGCGCCGGA TGGGGATGTG TGAGGAACAG GGTAGTGGTC TCGACAAGGT GCTGCAGCTC
GTTGAGGTAT CGCAATTGCC GCCGCCGCTT TTTCGCTCGG AGCAAAACAC CACCCTGGTC
ACACTCTACG CTCCGCGCAG CTTCGCCGAG ATGACGCCCG ACGAGCGTGT GCGTGCGTGC
TATTTCCACG CAGTTCTCCG CTTCTTGAGC GGCGACAAGA TGAAAAACTC GACGTTGTGC
GAGCGCCTGG GGATCGCCAC GAAAAATGCC GCGCAAGCGT CAGCGGTTAT AGCCAAAACG
TTGGAGGCTG GCCTGATCCG AGTCGCGGAT CCAGAACACC CCCGAGCAGG CTATCTACCT
CACTGGGCGT GA
 
Protein sequence
MNLERDIALV DELRSHTSEC QWLEFKKNNT DHEMIGKRCS ALSNAARIEG RDTAYMLWGI 
EDETHNVVGT SFDPESQKVG GVVLQLWLAN ALQPSITFSF RTIAHPEGCV VLLEIPAATG
TPVSYNGIPY VRIGSATPKL TEYPERYQKL LERMQPYRWE HGVAAQYIKG DDVLELLDYS
HYFRLTKQPL PDNRSGIFEK LAADRLIARD VSDRWNITNL GAVLFASRLS DFDAGLARKA
VRFVAYEGKN RAATVTHRLD GEKGYAVGFE GLVSFLNELL PKKEHIGALR EAAIVFPELA
IRELVANALI HQDMTLTGAG PLIELFEDRI EISNPGEPLV KPERMIDLPP RSRNEALASL
MRRMGMCEEQ GSGLDKVLQL VEVSQLPPPL FRSEQNTTLV TLYAPRSFAE MTPDERVRAC
YFHAVLRFLS GDKMKNSTLC ERLGIATKNA AQASAVIAKT LEAGLIRVAD PEHPRAGYLP
HWA