| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A3119 |
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| Symbol | rpoN |
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| ID | 4886549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 668 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009075 |
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| Strand | - |
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| Start bp | 2959332 |
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| End bp | 2960807 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640133055 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001064110 |
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| Protein GI | 126443717 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.194904 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCCA CGCTCGCGTT GCAAATGCGT CAACACCTGG CGCTCACGCC GCGCTTGCAG
CAGTCGCTGC GTTTGCTCCA GCTTTCGTCG CTCGAGTTTC AACAGGAACT GCGTCAGGCG
CTCGATACCA ATCCGTTTCT CGAAGACGTG CAATCGCCCG ACGACGATGC TGCCGAAGCC
GCGCCGAAGC CGGGCGAGAC GCCCGCCGCC GACGCAAACG CGAGGGCGGA CGACGGCTAC
GCCGAACGCG ACGAGGGCCC GTTCGCGACC GACGCGTCGC CGCCCGCCGG CCAGGACGTG
CCGCTGACGG CGGAGCTCTC GGCGCGCGGC TCGAGCCGGC GCTCCGACGA CGCGTCGGAT
CTCGAGCCCG GCGACTGGAT GACGGCCGAG CCGACGCTGC ACGAGCATCT GCACGACGCG
CTGCGCCTTT GCCAGCTCAC CCGGCGCGAC CGCACGCTCG CGCGCATGAT CATCGACGCG
CTCGACGACG ACGGCTATCT GCGCCAGGCG CTGCCCGAGC TCGCGGCGGC GGCCGATCCG
CTGCTGCATC CGGCCGAGCA GGAACTGCTC GTCGCGCTGC GGCTCGTGCA GTCGCTCGAT
CAGCCCGGCA TCGGCGCGCG CACGCTGTCC GAATGCCTGT TGCTGCAGCT CGACGCGATG
CCCGCGGACA CGCCGGGCGT CGAATGCGCG AAGGAGATCG CCGCGCATCA CCTCGAGCGT
CTCGCACGCC GCGAGACGGC CGAGATGCAG CGCCGCATCG GCTGCGACAC GCACACGCTG
CGCATCGCAT GCGCGCTCGT GCGCCGGCTC GATCCGCGCC CCGGCAACCA GTACGGCAGC
ACGGCGGGCA ACTATGTCGT CCCCGACGTG ATCGTGCGGC AGGTGCGCAA CGACTGGCTC
GTCACGATCA ACCCCGCCGT GATGCCGCGC GCGCGCATCC ATCGCCGCTA CGCGGAGCTG
TTCGCGCAAT CGAGCGGCTC GAATCAGTCG CCGCTCGGCC AGCAACTGCA GGAGGCGCGC
TGGCTGATCC GCAACGCGCA GAAGCGTTTC GACACGATCC GCCGCGTCGG CGAGTGCATC
GTCGAGCGGC AGCGCGACTT TTTCCGCTAC GGCGAGATCG CGCTGAAGCC GCTCGTGCTG
CGCGACATCG CCGACGAGCT CGGCCTGCAC GAATCGACGA TCTCGCGCGC GACCGGCAAC
AAGTACATGT CGACGCCGCA CGGCACGTTC GAGTTCAAGC ACTTCTTCCC GCGCAAGCTC
GAGGCGGCGG GCAAGGGCGC GTGCTCGGCG GCCGTCGCGA GGGTGCTGAT CCGCGACATG
ATCGCGGCCG AACAGGCGAT CGATCCGCTG TCGGACGTCG CGCTCGCGCA GCGTCTGGCG
GGGCGCGGGA TCGTGCTCGC GCGCCGCACC GTCACGAAGT ATCGGCAGGC GATGAAGATC
CCGCCCGCGG AATTGCGCCG CCGCGCGCCT CTATGA
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| Protein sequence | MSATLALQMR QHLALTPRLQ QSLRLLQLSS LEFQQELRQA LDTNPFLEDV QSPDDDAAEA
APKPGETPAA DANARADDGY AERDEGPFAT DASPPAGQDV PLTAELSARG SSRRSDDASD
LEPGDWMTAE PTLHEHLHDA LRLCQLTRRD RTLARMIIDA LDDDGYLRQA LPELAAAADP
LLHPAEQELL VALRLVQSLD QPGIGARTLS ECLLLQLDAM PADTPGVECA KEIAAHHLER
LARRETAEMQ RRIGCDTHTL RIACALVRRL DPRPGNQYGS TAGNYVVPDV IVRQVRNDWL
VTINPAVMPR ARIHRRYAEL FAQSSGSNQS PLGQQLQEAR WLIRNAQKRF DTIRRVGECI
VERQRDFFRY GEIALKPLVL RDIADELGLH ESTISRATGN KYMSTPHGTF EFKHFFPRKL
EAAGKGACSA AVARVLIRDM IAAEQAIDPL SDVALAQRLA GRGIVLARRT VTKYRQAMKI
PPAELRRRAP L
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