Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS668_A1043 |
Symbol | opcP |
ID | 4888968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 668 |
Kingdom | Bacteria |
Replicon accession | NC_009075 |
Strand | + |
Start bp | 1008346 |
End bp | 1009548 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640130983 |
Product | porin |
Protein accession | YP_001062042 |
Protein GI | 126444745 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGC GCACTGCGGT CGCGATGACG GCCGCCGGAC TGGCGGCTGT CGCCACCGCG CACGCTCAGA GCAGCGTGAC GCTTTACGGC ATCGCCGATA ACGGCATCGC GTATCAAAGC AGCAGCACGT CGCTCGGCTC GACGACGGGC GGCCGCTCGG CGGTGAAGAT GTCGACGGGC GTGTGGGCGG GCAGCCGCTT CGGCCTGAAG GGCAGCGAGG ATCTCGGTGA CGGCTCGAAG GCGATCTTCC AGCTCGAATC GGGCTTCAGC ACGGCCAACG GCACGTCGCA GTTCGCGGGC GGCATCTTCA CGCGCCAGGC GTGGGTCGGC CTGACCAACC CGACGTACGG CACGCTGACG GCGGGCCGCC AGTACACCGC GTACTACACG CTGCTGTCGC CGTATAGCCC GACGACCTGG CTCACCGGCT ATTTCGGCGC GCATCCGGGT GACATCGATT CGCTCGATAC CAGCTACCGC ACGAACAATT CGCTCGTCTA CCTGTCGCCG AAGTTCTACG GCTTCACGTT CGGCGGCTCG TATGCGTTCG GCGGACAGCC GGGCAGCGTG AACGCCGGCT CCACGTGGAG CGCGGGCATC CAGTACATGA ACGGTCCGCT CGGCATCGCG GCGGCGTTCC AGCGCGTGAA CAACTCGACG TCGGGCGGCG GCGACTGGGG CGCGAATTCG ACGACGTCGA ACGGCGGCGC GCAGACGGCC GTGTCGGCGA TCAACAACGG CTACAAGACC GCGCAGGCGC AGCAGCGCGT CGCGGTGACG GCCGGCTATC AGTTCTCGTC CGCATGGGAC ATCTCGGTGT CGTACTCGAA CGTGCAGTAC ATCCCGGGCG TGAACTCGGC GTTCCGCAAC ACGGCGATCT TCAACACGGC GGGTGCGGTG CTGCACTTCA AGCCGTCGGC TCAGTGGGAC TTCGCGGGCG GCTACGCGTA CACGCGCGCG ACCCAGTCGA ACGGCATCAC GAGCGCCGCG CAGTACCATC AGTTCACGCT GTCGCAGTAC TACAGCCTGT CGAAGCGCAC GGGCCTGTAC GCGGTTGAAG CGTATCAGCG CGCGAACGGC AAGACGCTCG CGGGCGGCAA GATCATCGAC GCGACCGCGT CGATCGGCGA CGGCTTCAAC ACGTCGCCAT CGTCGTCGCG CAGCCAGGTA GGCGTCGGCG TCGGCCTGAT CCACCGTTTC TGA
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Protein sequence | MKKRTAVAMT AAGLAAVATA HAQSSVTLYG IADNGIAYQS SSTSLGSTTG GRSAVKMSTG VWAGSRFGLK GSEDLGDGSK AIFQLESGFS TANGTSQFAG GIFTRQAWVG LTNPTYGTLT AGRQYTAYYT LLSPYSPTTW LTGYFGAHPG DIDSLDTSYR TNNSLVYLSP KFYGFTFGGS YAFGGQPGSV NAGSTWSAGI QYMNGPLGIA AAFQRVNNST SGGGDWGANS TTSNGGAQTA VSAINNGYKT AQAQQRVAVT AGYQFSSAWD ISVSYSNVQY IPGVNSAFRN TAIFNTAGAV LHFKPSAQWD FAGGYAYTRA TQSNGITSAA QYHQFTLSQY YSLSKRTGLY AVEAYQRANG KTLAGGKIID ATASIGDGFN TSPSSSRSQV GVGVGLIHRF
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