| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A0381 |
|---|
| Symbol | prpR |
|---|
| ID | 4886228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009075 |
|---|
| Strand | - |
|---|
| Start bp | 344763 |
|---|
| End bp | 346874 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640130322 |
|---|
| Product | propionate catabolism operon regulatory protein PrpR |
|---|
| Protein accession | YP_001061387 |
|---|
| Protein GI | 126443105 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.385394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCC TACCCGAAAC CGGCGTGCGG CCGCGCGTCT GGGCGGTCGG CATCAGCCGG
CTGCGCGCGC TCTTTCGCGA CATCGCCGAC GAATACGAAG AACGCGCCGA TCTGCGGATC
GTCGCGCGCG GCTACGAGGA GGCGATCACG GCGCTCGCGA CGGCGGGCGC CGAGCGCCCC
GACGCGATCG TCGCCGCCGG CTCGAACGGC ACCTATCTGA AGGCGCGCGT GCGCGTGCCC
GTCGTGCTCG TCAATCCGAC CGGCTTCGAC GTGATGCACG CGCTCGCGCG GGCGCGGCGC
GATGCGGGCC GGATCGCGCT CGTCAGCTAC GGCGAGACGC CGCCCGAGGT GCGCAGTTTC
GCGGCCGCGT ACGGGCTCGA CGTCGTGTTC GCGTCGTACC AGAGCGCGCA GGAGGCGGAC
ACGCGCGTGC TCGAGATGCG CGAGCGCGGC ATCGAGACCG TCGTCGGGCC GGGGCTCGTC
ACCGATCTCG CGGCGAACGC CGGGATGGGC GCGGTGTTCG TCTATTCGCA CGCGTCGGTG
CGCGCCGCCG TGAACACCGC GCTCGAGGTC GCGCACGCGA CGCACGCGGA AGCGCTGCGC
CGCGAGCGCC TCGACAACCT GCTGCAGCAC CTGCGCGACG GCGTGGTGGC GCTCGACCGC
GAGGGCCGCA TCGAGGCGAT CAACGAGCGG CTCGCGCTCG CGCTCGGCGT ATCGCCGTCG
GCCGCGGTGG GCCGCGCGCT GGACGATCTG ACGCCCGAGC TGCGCACGCT GCGCGCGGCC
GACGGCGACA CGCTCGCGAC GGTGCGCGGC GTGCGCTACG TCGTGCATCG CGGGCCGCTC
GCCTCGAGCG GCGGCGCGCC CGGCAGCGTG CTGACGTTCC AGGAATCGCG TGCGGTCGAG
CGGCTCGACC GCACGCTGCG CTCGCATCAG CACGCGCAGC AGTTCACCGC GCGCTACCGG
CTCGACGACA TCGTCGGCAC GACGCCCGCG ATCGCGTACG CGCGCGACCT CGCGCGGCGC
TACGCGAAAT CGGACGCGAC CGTGCTGATC CTCGGCGAGA GCGGCACCGG CAAGGAGATG
ATCGCGCAGA GCCTGCACGC GCTGTCCGCG CGCCGCAAGT ATCCGTTCGT CGCGGTCAAC
TGCGGCGCGT TTCCGGAATC GCTGCTCGAG AGCGAGCTGT TCGGCTACGA GGAAGGCGCG
TTCACCGGCG CGCGGCGCGG CGGCAAGGCG GGGCTGTTCG AGGCCGCGCA CCGCGGCACG
CTGTTTCTCG ACGAGATCGG CGAAATGCCC CCGTCGCTGC AAAGCCGGCT GCTGCGCGTG
CTGCAGGAGC GCGAGGTCGT GCGCGTCGGC TCGACCGAGC CGGTTCCGGT CGACATCCGC
GTCGTCGCCG CGACGCACCG GCCGCTCTTC GCCGCCGTCG AGGCGGGCAC GTTCCGCGCG
GATCTCTATT ACCGGCTGAA CATCCTGAAC ATCGGGCTGC CGCCGCTGCG CGAGCGCGCG
GCCGACATTC CGGCGCTCGC CGCGACGCTG CTCGCGCAGG CCGCGCGCCG CGAGCCGCGG
CTCGCCGAGC GGCTGCGCGA CGCCAACGAT GCGGCGCGCG CGCTCGACGC GGCGAACGCC
GCGCTCGCCC GCTATCGATG GCCGGGCAAC GTGCGCGAAT TGCAGAACGT GATCGAGCGC
ATCGCCGTCG AGCTCGCCGA CGCGGGCGAG CGCGGCGATG CGGCCGTGAG CGCCGACACG
CTGCGCGCGA TCGCGCCCGA GGTGTTCGCG CTCGATACGC TCGGCGGGTT CGGCTCGTTC
GGCTCGTTCG GCTCGTTCGG CTCGGCGGCG GGCGGCGGGC ACGGCGACGC GAGCGGCGGA
GATATCGATG CCGATGCCGA CGCGCGACGC CCGACGCTCG TGCAGCGCCG CCGGCGCGCG
GAAGCCGACG AGATTCGCGC GGCGCTCGAC GCATGCGGCG GCGACCGCGA CCGCGCGTGC
GCGAGGCTCG GCATCAGCAA GACGACGCTG TGGCGCAAGC TCGCGGCGAG CGAAGGGAAA
GCGCGAGGCA ATAAGCGCGG CGAGCGCGGC GGCGGCCACG GCGGCGACAA CGACGAAGGC
GCGGGTGCGT GA
|
|---|
| Protein sequence | MSTLPETGVR PRVWAVGISR LRALFRDIAD EYEERADLRI VARGYEEAIT ALATAGAERP
DAIVAAGSNG TYLKARVRVP VVLVNPTGFD VMHALARARR DAGRIALVSY GETPPEVRSF
AAAYGLDVVF ASYQSAQEAD TRVLEMRERG IETVVGPGLV TDLAANAGMG AVFVYSHASV
RAAVNTALEV AHATHAEALR RERLDNLLQH LRDGVVALDR EGRIEAINER LALALGVSPS
AAVGRALDDL TPELRTLRAA DGDTLATVRG VRYVVHRGPL ASSGGAPGSV LTFQESRAVE
RLDRTLRSHQ HAQQFTARYR LDDIVGTTPA IAYARDLARR YAKSDATVLI LGESGTGKEM
IAQSLHALSA RRKYPFVAVN CGAFPESLLE SELFGYEEGA FTGARRGGKA GLFEAAHRGT
LFLDEIGEMP PSLQSRLLRV LQEREVVRVG STEPVPVDIR VVAATHRPLF AAVEAGTFRA
DLYYRLNILN IGLPPLRERA ADIPALAATL LAQAARREPR LAERLRDAND AARALDAANA
ALARYRWPGN VRELQNVIER IAVELADAGE RGDAAVSADT LRAIAPEVFA LDTLGGFGSF
GSFGSFGSAA GGGHGDASGG DIDADADARR PTLVQRRRRA EADEIRAALD ACGGDRDRAC
ARLGISKTTL WRKLAASEGK ARGNKRGERG GGHGGDNDEG AGA
|
|---|
| |