Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS668_2031 |
Symbol | |
ID | 4883893 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 668 |
Kingdom | Bacteria |
Replicon accession | NC_009074 |
Strand | - |
Start bp | 2025774 |
End bp | 2028275 |
Gene Length | 2502 bp |
Protein Length | 833 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640127959 |
Product | outer membrane usher protein YcbS |
Protein accession | YP_001059066 |
Protein GI | 126442073 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.617204 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGGCCG CCGCGCTCGC GGCGCTTTCG GCGACCGCTC GCGGCCAACA GGCGCTGGAG TTCGATCCCG CCTTTCTCGA GCTGGGCGGC GGCCAGGGCG GGGCCGATCT TTCCGTGTAC GCGACATCGA ACCGCGTGCT GCCCGGCGTC TATCCGGTAT CGGTCTTCGT CAACGGCGAG GCGATCGAGC GGCGCGACAT CACGTTCGTG TCCGAAAGCG CGCGCGACGG GCGGGAAGAC GCGATCCCCT GCCTGAGCGC CCGGATGTTC GACGAATGGG GCGTCGACAT CGCCGCGTTT GCGAAGCTCG CGCAAGCCGG CGAAGACGCA TGCGTCGACA TCGCCGACAG CGTGCCCCAC GCGCGAACCG AGTTCGACAG CCATCAACTG CGGTTGAACG TAACGGTGCC CCAGGCCGCG TTGAAGCGGC GCGCGCGCGG CGCGGTGGAC CCGGCGCGCT GGGATCAGGG TATCGACGCC GCGCTGCTCG ACTATCAACT GAGCGCCGCC CAGTACGCCG GCGGCAATTT CGCGTCCGCC CGTTCGCGCA CGACGTTGTA TGCGGGGTTG CGCGGCGCCG TCAATCTGGG CGCATGGCGG CTGTCGCACA CGTCGTCGTT TCTGCGCGGG CTCGACGGCC GGAATCGCTT TCAGATCGTC AATACGTTCG TCCAGCGCGA CATCGCCGGC TGGAACAGCC GCCTCACCGC CGGGGAGGGC ACCACGCCCG CGAACATTTT CGACGGATTT CAGTTTCTCG GCGTGCAGCT CAATACCGAC GAGACCATGC TGCCCGACAG TCTGCAGGGC TACGCGCCCA CCGTGCACGG CGTCGCGCAG ACCAATGCGC AGGTGACGAT CAGGCAGAAT GGTTTCGTCA TCTACAGCAC CTACGTGCCG CCGGGGCCGT TTACGATCGA CGATCTTTAT CCGACGTCCT CGTCGGGCAA TCTGGAAGTG ACGATTACCG AGGCCGACGG GCACGTCACG ACATTCACGC AACCGTACTC CGCGGTGCCG ATGTTGCTGC GCGACGGTTC GTGGCGGTAT AACGTCACGG CGGGCCAATA CCGTGACGGC ATTTCAGGCT CGCATCCGAG CTTTGCGATG GCGACGCTCG CGCGCGGGCT GGCAGGCGAA TTCTCGTTGT ACGGCGGTTT CATCGGGGCC GGCATGTATC AATCGGTGCT CGTCGGAATC GGCAAGAACC TGGGCAGCAT CGGCGCGGTA TCGCTCGACG TGTCGCACGC GCGCAGCGCG GTCGACCTGG CCGACAGCAG GACGGTGTCG GGGCATGCCT TTCGCGTGCT TTACGCGAAG GCCGTGGGCA GTTGGGGCAC CGATTTCCGG TTGCTCGCAT ACCGCTACTC CACCGCCGGC TATCGAAGCT TCGCCGATGC GGTGCAACTG CGCGACGGCA GCGAGCCCGC GGCGCTGGGC GCAAAGCGCC AGCGCCTCGA GGGCACGGTG AACCAGCGTC TCGGCCGCCT CGGCTCGATG TACGCGACCG TGGCCGTGCA GACCTACTGG GGCAGCGCGG CGCGCAGCAC CGTGTATCAG CTCGGGCACA GCGGGAATTG GGGGCGCGCC AGCTACGGAC TCTATGCGGC CTATAGCAAA GGAAGCGGCG TGCCGTCGAG CTGGAACGTC TCGTTGTCGC TATCGATGCC GCTGGAAGTG TTTTTCGGCG GCGCGCGCGT GCGTGCGCCG GCGGGCGGCA GCGCGAATGT CTCGTACTTC GTCAGCCGGA ACAACGAGAA CCACGTCAAT CAGCAGATGA CGGCCAGCGG CAGCAGCAGC GAGCAGCGCC TGAACTACAG CGTGGGCGTC GCGCATTCCA GCGAGTCGGA CGTGAGCGGC TCAGTGTCGA CCAGCTATCT CGCGCCGTTC GGCCGCTACG ACGCGTCGAT CGACAGCGGC CGAGGGTACA CGCAGGCCGC GTTCACCGCA GCCGGCGGCA TGCTGTGGCA TGGCACCGGA GTGTTGTTCA CGCAACCGCT CGGCGAGACC GTGGCGGTCG TGGACGTGCC GAACGTGCGG GGCGTGCGTT TCGAAATGCA CCCGGGCGTG AGCACGGATC GGGCGGGCGA AGCGGTGATT CCGCGGCTGA ACCCCTATCG GGTCAACCGC ATCGCCGTCG ACCAGCGCCG GATGCCGCAG GACGTGGAGA TCCGCAACCC GGTGAGCGAA GTCGTGCCCA CCCGGGCGGC GGTCGTTCAA ACGCACTTCG ATTCCGTCGT CGGGCTTCGC GCGCTGTTCA CGTTGACGCG CGCGGACGGC TCGTTTCCGC CGCAGGGCGC GACGGCCGAG AACGACGAGG GACAGGTGCT CGGCGTCGTC GGGATGGACG GCGAGACGTT CGTGGCGGGC TTGCCCGCCG CCGAAGGGCA TTTCGTCGTT CGCTGGGGGG CGGCGCGACA GAATCGCTGC CGCGTGAATT ACGCGCTGCC CGGAAAGGCG GCGAACGGCG CGTACACGGC CGTGGAGGCG ACATGCGATT GA
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Protein sequence | MLAAALAALS ATARGQQALE FDPAFLELGG GQGGADLSVY ATSNRVLPGV YPVSVFVNGE AIERRDITFV SESARDGRED AIPCLSARMF DEWGVDIAAF AKLAQAGEDA CVDIADSVPH ARTEFDSHQL RLNVTVPQAA LKRRARGAVD PARWDQGIDA ALLDYQLSAA QYAGGNFASA RSRTTLYAGL RGAVNLGAWR LSHTSSFLRG LDGRNRFQIV NTFVQRDIAG WNSRLTAGEG TTPANIFDGF QFLGVQLNTD ETMLPDSLQG YAPTVHGVAQ TNAQVTIRQN GFVIYSTYVP PGPFTIDDLY PTSSSGNLEV TITEADGHVT TFTQPYSAVP MLLRDGSWRY NVTAGQYRDG ISGSHPSFAM ATLARGLAGE FSLYGGFIGA GMYQSVLVGI GKNLGSIGAV SLDVSHARSA VDLADSRTVS GHAFRVLYAK AVGSWGTDFR LLAYRYSTAG YRSFADAVQL RDGSEPAALG AKRQRLEGTV NQRLGRLGSM YATVAVQTYW GSAARSTVYQ LGHSGNWGRA SYGLYAAYSK GSGVPSSWNV SLSLSMPLEV FFGGARVRAP AGGSANVSYF VSRNNENHVN QQMTASGSSS EQRLNYSVGV AHSSESDVSG SVSTSYLAPF GRYDASIDSG RGYTQAAFTA AGGMLWHGTG VLFTQPLGET VAVVDVPNVR GVRFEMHPGV STDRAGEAVI PRLNPYRVNR IAVDQRRMPQ DVEIRNPVSE VVPTRAAVVQ THFDSVVGLR ALFTLTRADG SFPPQGATAE NDEGQVLGVV GMDGETFVAG LPAAEGHFVV RWGAARQNRC RVNYALPGKA ANGAYTAVEA TCD
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