| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_1590 |
|---|
| Symbol | |
|---|
| ID | 4884726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009074 |
|---|
| Strand | + |
|---|
| Start bp | 1557430 |
|---|
| End bp | 1560270 |
|---|
| Gene Length | 2841 bp |
|---|
| Protein Length | 946 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640127518 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_001058631 |
|---|
| Protein GI | 126441823 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATCC CCACTGACGT TCTGCAAGCA CTCTTCGGCG GCTGGTCGCA ACACGACCGC
TTTCTCTGGA TCACGACGCC GCTCGGCGCG AACGCGCTCG TCGCGGAAAG CCTGCACGGC
TGGGAGGCGC TCGACGATGG CGGCTTCCGT TTGCAGCTCA CCGCGCTCGC CGAGCATCCG
TCGCTGCCGC TCGCGCAACT GATCGGCGCG CCGATCCTGA TCGAATGGCA GGCGCAGGAA
GGGCGCGACG CGCGCCGGCC GTTCCACGGC CACGTGATCG CCGCCGAGCT CGTCGGCTAC
AACGGCGGCC TCGCACGCGT GCTGCTCGTC GTCGAGCCGT GGCTCACGCT GCTGCGGCAG
CGCGTCGACA GCTACAACTA TCTGGACGCG AGCGTCGTCG AGATCAGCGA ACAGGTGTTC
CGCCGTTACG CGCGCGGCGC GATCGCGCCC GCATGGCGAT GGGCGCTCGC CGATGCGGCG
AAGTACCCGA AGCGCAGCTT GACCGCGCAA GCCGGCGAGT CCGATTTCGA TTTCCTCGAG
CGGCTCTGGG CGGAGGAGGG CATCTTCTAC TGGTTCGAGC ACGAAGGCGA CGCGCGCGCA
TCGAGCCTTG GCAAGCACAC GCTCGTGCTC GCCGATTCGA ATCAGCGCTT CGCGCCGGAC
GAACCGGAGA TCGTCGGCTT TCATCAGACG AGCGACGACG ACCCGCAAGG CTGCATCCAG
CACTTCATGC ACGCGCGGCG TTGGCGCATC GGCAGCGTCG CGCGCGCGAG CTGGGATCAC
CGCAGCCTGT CGACGCGTCC GACGGGCGCG CGCGCGAACG GCGCGGTCGC GCCGGGCGAG
GATCGCGACG TCGCGGGCCC GTACGCATAC CAGACGGGCG CGATCGGAGA CCGGCGCGCG
CAGCAGCAAC TCGACGCCCA GCGCGTGGCC GCGCTGCGGA GCGAAGGCCG CAGCACGCGC
CGCGATCTGC GGCCCGGGCT GCGTTTTGCG ATCGCGCATC ATCCGACGCT CGGCGTATCG
GATGCGTTCA TCTGCCTGCG CGTCGAGCAT TCGGCGCGCG CGAACGTCGA CGCGACCGTG
CGCAGCGCGA TCGAACAGCG CCTCGGCGCG ATTGCGTCGA TCGCCGGCGC CGCGCCGGTG
CCGCATGGCC CCGCGAGCGC GCTGAATGCG GCGCTCGGCG CCGATACGCA TCACGGCGGA
TCGCTGATGC GGGACGACGC CGTCTATCGC AATCGCTTCG TCGCGTTGCC CGCCGAGCAG
ACGTATCGGC CGCTCGCCGC ATCCGGCCAT GGCGCGCGCA TGCACCCCGT CGCCGTGATG
CCGGGGGCGC AGACGGCGAT CGTCGTGGGC GCGGGCGATC CCGTTCACAC CGACCGGGAT
CACCGGATTC GAATCCAGCA CCACGCGCAG CGCGGCGAGA ATGCGGCGAG CCGCGACGAT
CACCCGCATG CGGCGAACGC GCCGGCGAAC CGTGGCGCGG GCACGTGGAC GCGGATGATG
ACGCCCGTGG GCGGTGATAA CTGGGGTGGG GTGAGCGTGC CGCGCGTCGG GCAGGAAGTG
TGGACCGAAT GGCTCGAAGG CCAGCCCGAC CGGCCGGTTG CGGTGGCCGC GCTCTACAAC
GGCCGCGGCA ACGCGCACGC GCAGCACAAC GCGCAGGCGG GAGGGCCGAG CGGCAGCACC
GGCAATGCGG CCGCATGGTT CGCCGGCAAT GCGCATGCGG CGGTGCTGAC GGGTTTCAAG
ACGCAGGACA TGAGCATGAG CCAGCAAGGC ACGGGCGGCT ATCGGCAATT CATGCTCGAC
GATACGGCGG GCCAGTCGAG CGCGCGCCTG TACACGACGG ACCGCAACAG CGGGCTCACG
CTCGGGCACG TGAAGCAGAC GCAGGACAAC CGGCGCCAGG CCGATCGCGG CTATGGCGCG
GAACTGGCGA CGGATGCCGC CGGCGCGCTG CGCGGCGGCG CGGGGCTCTT GATCAGCACG
GCGCCCGGCG TGAGCCAGAT GGATGCGAGC GCGCCGAGCC AGGTGCTCGC TCAGCATCGA
CAGACGTTGC AAAGCCTCGC GGCGCTCGCG CACAAGCAGG GCGCGGAGCC GGGCGGTGCG
GTGCCCGAGG CGGCGGGCGG AGCCGGCGCG GCGTCGGCGT CGACGGGGGC GGCGGCGGAC
AAGCCTTTGC CGGCCGTCGA CGGCATCGAG CAGAGCCGTG AAGCGATCGG CGCGACGCGT
GAAGGAAGCG GCGGCGATAC GGCAGGCGGC GGGGGCGGCG GCGCGATTGC GTGGAGCAAG
CCGCATCTCG TCGCACACGG CGAGGCGGGG CTGGCCGCGA TGTCGGCGAA GAGCCACGTG
TGGGTGTCGG GTACCGAGAC GGTGCTGAGC GCCGGACAGG ACGTGCAATT GACGGCGAAG
GGCAAGACGA GCGTCGTCGC GAATCACGGC ATCTCGCTGT ATACGCAGGG CGCGGCGGGC
GACGGGCGGC CGGTTGCCGG CCGGGGCATC GCGTTGCACG CGGCGTCCGG CGCGGTGAGC
GTGCAAGCGC AGAACGCCGG CAAGCTGAGC GCGAGCGCGC AGAAGGCGGT GACGCTCGCG
AGCGCGCAAG GCAGCGCGTC CGTGCAGGCG CAGCAGCGCG TCCTGCTGAG CGCGGCGAAG
GCCTATCTGA AGATGGAAGG CAACGACATC GTCGTCGGCG CGCCGGGGCG CGCGGATTTC
AAGGCGGCGG CGCATCAGTT GACGGGGCCG AAGAGCGCGG GGGCGTCAGC GCAAATGCCG
AAGAGCGAAC CGAAGCTGTG CGAGTACAAG ACGCGCGCGG CCGACGTTGC TCACGAAGGC
ACGATGAAGT CGGCGGCTTG A
|
|---|
| Protein sequence | MSIPTDVLQA LFGGWSQHDR FLWITTPLGA NALVAESLHG WEALDDGGFR LQLTALAEHP
SLPLAQLIGA PILIEWQAQE GRDARRPFHG HVIAAELVGY NGGLARVLLV VEPWLTLLRQ
RVDSYNYLDA SVVEISEQVF RRYARGAIAP AWRWALADAA KYPKRSLTAQ AGESDFDFLE
RLWAEEGIFY WFEHEGDARA SSLGKHTLVL ADSNQRFAPD EPEIVGFHQT SDDDPQGCIQ
HFMHARRWRI GSVARASWDH RSLSTRPTGA RANGAVAPGE DRDVAGPYAY QTGAIGDRRA
QQQLDAQRVA ALRSEGRSTR RDLRPGLRFA IAHHPTLGVS DAFICLRVEH SARANVDATV
RSAIEQRLGA IASIAGAAPV PHGPASALNA ALGADTHHGG SLMRDDAVYR NRFVALPAEQ
TYRPLAASGH GARMHPVAVM PGAQTAIVVG AGDPVHTDRD HRIRIQHHAQ RGENAASRDD
HPHAANAPAN RGAGTWTRMM TPVGGDNWGG VSVPRVGQEV WTEWLEGQPD RPVAVAALYN
GRGNAHAQHN AQAGGPSGST GNAAAWFAGN AHAAVLTGFK TQDMSMSQQG TGGYRQFMLD
DTAGQSSARL YTTDRNSGLT LGHVKQTQDN RRQADRGYGA ELATDAAGAL RGGAGLLIST
APGVSQMDAS APSQVLAQHR QTLQSLAALA HKQGAEPGGA VPEAAGGAGA ASASTGAAAD
KPLPAVDGIE QSREAIGATR EGSGGDTAGG GGGGAIAWSK PHLVAHGEAG LAAMSAKSHV
WVSGTETVLS AGQDVQLTAK GKTSVVANHG ISLYTQGAAG DGRPVAGRGI ALHAASGAVS
VQAQNAGKLS ASAQKAVTLA SAQGSASVQA QQRVLLSAAK AYLKMEGNDI VVGAPGRADF
KAAAHQLTGP KSAGASAQMP KSEPKLCEYK TRAADVAHEG TMKSAA
|
|---|
| |