| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_1357 |
|---|
| Symbol | |
|---|
| ID | 4883902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009074 |
|---|
| Strand | - |
|---|
| Start bp | 1321994 |
|---|
| End bp | 1323829 |
|---|
| Gene Length | 1836 bp |
|---|
| Protein Length | 611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640127285 |
|---|
| Product | sensory box diguanylate cyclase/cyclic diguanylate phosphodiesterase |
|---|
| Protein accession | YP_001058400 |
|---|
| Protein GI | 126441016 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCCA TCAGGAACAA AACGCCCCGC AAGGGCTCCT GGCGCGCCGC ACTTCACCAG
CTCCGCCGCT TCGCCTGGTC GGGCGGCGCG CTGATGCCCG CGCGCGCCGG TACGCCGCGC
GCCGACGACA CAGTTCGAAG CTGGCTGGAG CAAACCGTCG GCGCGGTCGA TTTCCTCGCC
CACGTGGACC GGGACCTGCG CTTCCTGTAC GTGTCCGATG CCAGCCTGCG CTTCATCGGT
TATCACCGCG ACTATCTGCA CACGCTGACG CTGCGCGAGC TGATCCCCGA GCAGGATACC
GCGACGCTCG ACGGCCTGCT CGCGCGCGCG TCGCAGACGG GCGATGTCGA GAAGGCGACG
CTCTGCCTCG TGAAATCGCT GACCTATCCG CTCGACGTCG AGGTGCGCGC GGTGCGCAGC
CGCCACCACG GCGTCGACGG CTTCGCGATC GCCGCGTTCG ACGTGTCGTC GTGGCGCGCG
ATCGAGGCCC GGCTCACCTA CGAGCTGCAC CACGATCCGA TGACGGGGCT CGATAACCTG
TCGGCGCTCC TGCCCGCGCT GATGCGCGCG CAACAGATCG CCGACGAAGG CGGCGGCTGC
ACGGCGCTGC TGCTGCTCGA TCTCGACGAT TACCAGCGGA TCAACCGCGC GCTCGGCTAC
GACGCGGGCG ACGCGCTGCT GCGCGACACC GCGCAGCGGC TGCAACGGCT CGCGACCCGC
GGCGAGCGGC TCGCGCGGGT CGCGAGCGAC AAGTTCGCGG TGATGCTGAG CGCGCCCACG
CGCGTCGCCG CGCTCGACGC GGCCGAAGCG CTCGCGCGCC AGCTGCAGAC GGCCGTCCAG
CGGCCGTACG CGTATGACGG GCAGGCCGTG CACCTGTCGG CGAGCGTCGG CATCGCGATC
TATCCGGACG CGCGCGCGAC GTCGAAGCAC GCGCAGCACC ACAGCCCGCT GCTGCGGCGC
GCGGACCGCG CGCTCGCGCA GGCGAAGGCG GCGGGCGGCA ACGCGCTCGC GTTCCACCAG
CCGACCGACG ATCCGGCCGA CGCCGAGCGC CTGAAGCTCG AGGCCGATCT CTACAACGGC
GTGCGCAACG GCGAGTTCTC GCTGCATTTC CAGCCGATCA CGAAGAGCCT GTCGGGCGCC
GTGGTCGGCG TCGAGGCGCT GATCCGCTGG CACCATCCGG TGCACGGGCT CGTCGCGCCC
GCGACGTTCA TCCCGCTCGC CGAATCGATC GGCCTCATCA ACTATCTCGG CAACTGGGTG
CTGAAGGCCG CGTGCATGCA GCTCGTGTCG TGGGACCGGC AAGGCATCGC GCTGCAGTAC
GTGGCCGTCA ACGTGTCGCC GCAGCAGTTC CGCGATCCGC GTTTCACGCA AAGCGTGCGC
GACGCGATCA AGCTGACGGG CATCGATCCG CGCCGCATCG TTCTCGAGAT CACCGAAAGC
CTGCTGATGC ACGATCCGAA TCATGCGAAG ACGCTGCTCG AGGAAGTGAC CGAGCTCGGC
ATCCGGTTCG CGGTCGACGA TTTCGGCACC GGCTACTCGA GCCTCGCGTA CCTGCAGAGC
TTCCCGCTCG CGAAGCTGAA GATCGACCGC AGTTTCGTCG AAAATCTGTT GACGTCCAGA
AACGACCGCG CGATCGTGTC GGCGGTCGTC GGCCTCGCGC AGACGCTCGA GCTCGAGCTC
GTCGCGGAGG GCGTCGAGAC CGAGGCGCAG CGCACGCTGC TCACCGAGAT GGGCTGCAAC
CACATTCAAG GCTGGCTCGT CTGCCAGGCG CTGCCGTCCG ACGAACTCGC GCAACGCTTC
GAGGCGCAGG AGCTCCATCT GCACGCCACC GCATGA
|
|---|
| Protein sequence | MEAIRNKTPR KGSWRAALHQ LRRFAWSGGA LMPARAGTPR ADDTVRSWLE QTVGAVDFLA
HVDRDLRFLY VSDASLRFIG YHRDYLHTLT LRELIPEQDT ATLDGLLARA SQTGDVEKAT
LCLVKSLTYP LDVEVRAVRS RHHGVDGFAI AAFDVSSWRA IEARLTYELH HDPMTGLDNL
SALLPALMRA QQIADEGGGC TALLLLDLDD YQRINRALGY DAGDALLRDT AQRLQRLATR
GERLARVASD KFAVMLSAPT RVAALDAAEA LARQLQTAVQ RPYAYDGQAV HLSASVGIAI
YPDARATSKH AQHHSPLLRR ADRALAQAKA AGGNALAFHQ PTDDPADAER LKLEADLYNG
VRNGEFSLHF QPITKSLSGA VVGVEALIRW HHPVHGLVAP ATFIPLAESI GLINYLGNWV
LKAACMQLVS WDRQGIALQY VAVNVSPQQF RDPRFTQSVR DAIKLTGIDP RRIVLEITES
LLMHDPNHAK TLLEEVTELG IRFAVDDFGT GYSSLAYLQS FPLAKLKIDR SFVENLLTSR
NDRAIVSAVV GLAQTLELEL VAEGVETEAQ RTLLTEMGCN HIQGWLVCQA LPSDELAQRF
EAQELHLHAT A
|
|---|
| |