Gene BURPS668_1086 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBURPS668_1086 
Symbol 
ID4882194 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia pseudomallei 668 
KingdomBacteria 
Replicon accessionNC_009074 
Strand
Start bp1064056 
End bp1065144 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content65% 
IMG OID640127014 
Productputative outer membrane porin 
Protein accessionYP_001058136 
Protein GI126439677 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.420468 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAG TTATGCTCGC GGCGGTACTG GCGACTGCCG GAGTGGCGGC TCACGCTCAA 
AGCAGCGTGA CGCTGTACGG CCGTCTGGAC GCCGGCATCG AATACATGAA CGGCCTGCCG
AGCGCGAACG GCGGCAGCAC GAGCCGCTGG CGCGCGGAAA GCGGCAACTG GGGCACGAGC
CTCTGGGGCT TGAAGGGCTC CGAGGACATC GGCGGCGGCA ACAAGATCGT GTTCCAGTTG
GAAGGCAGCT TCGACACGAT GAACGGCAAC GGCCCGGGCG CCGGCAGCAT CTGGAACCGC
TGGGCAACGA TCGGCATCTC CAACGACACG TACGGTACCC TGCTGCTCGG CCGCGAGCTC
GCGATCGCGA ACGGCGTGTG GGACTTCGAT CCGTTCGGCC AGTCGTCGTG GTCGACGGCT
TCGCTCGTGC GCGGGCGCAA CTGGAACAAG ACCAGCAACA ACATTTCGTA TCAATCGCCG
AAGTTCTACG GCTTCGACGT CTACGGCCAA TACGCGCTGT CGAACGCGAC GAACTGGAAC
GGCAACGGCT CGACGAGCCA GGGCCGCAGC GCGGGCCTGC AGCTCACCTA CACGACCTCG
CTGTTCCAGA TCCGCGGCCT CTATGACGAA GCGCGCGATC CGGCGAACGG CAAGCTCGAC
GACGTGTTCA ACTACTCGCG CGAATATTTC GCCGGCGTGA ACGTGTTCCT CGGCCAGTTC
AAGCTGCAGG CGGCATACCA GGCGTCGCAC GCGGACGGCG GCCCGGTCGT GAACAACGGC
ATCACGACGA CCCAGCAGGT CTGGGGCGGC GTGACGTGGC AGGCAACGCC CGCCGCCGCG
CTGATCGCGG CCGTCTATCA CGTGAACGCG AATCACGGCG GCGGCAACGC GAACATCTTC
ACGGTCGGCG GCTCGTACAA CCTGTCGAAG CGCACGCTGC TCGACGTGCA GGTCGCGACG
GTGCGCAACA GCAAGACCGC GAACTTCGGC CTGAACGCGA ACCCGGCCGG CACCGACATC
TCGACCGGCA ATCCGAAGTT CGGCGGCAGC CAGACGGGCG TGTACGCCGG CATCCAGCAC
CTGTTCTGA
 
Protein sequence
MKKVMLAAVL ATAGVAAHAQ SSVTLYGRLD AGIEYMNGLP SANGGSTSRW RAESGNWGTS 
LWGLKGSEDI GGGNKIVFQL EGSFDTMNGN GPGAGSIWNR WATIGISNDT YGTLLLGREL
AIANGVWDFD PFGQSSWSTA SLVRGRNWNK TSNNISYQSP KFYGFDVYGQ YALSNATNWN
GNGSTSQGRS AGLQLTYTTS LFQIRGLYDE ARDPANGKLD DVFNYSREYF AGVNVFLGQF
KLQAAYQASH ADGGPVVNNG ITTTQQVWGG VTWQATPAAA LIAAVYHVNA NHGGGNANIF
TVGGSYNLSK RTLLDVQVAT VRNSKTANFG LNANPAGTDI STGNPKFGGS QTGVYAGIQH
LF