| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A1250 |
|---|
| Symbol | oppD |
|---|
| ID | 3693393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007435 |
|---|
| Strand | - |
|---|
| Start bp | 1560883 |
|---|
| End bp | 1561872 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637731504 |
|---|
| Product | oligopeptide ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_336407 |
|---|
| Protein GI | 76818426 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTAC TCGAAGTCAA GGATCTCGGC GTGCGCTTCA CGCGCCGTGA AGGCGAGCCC
GTCGACGCGG TATCGGGCGT GTCGTTCTCG CTAGAGGCGG GCAGGACGCT CGGCATCGTC
GGCGAATCGG GCTCCGGCAA GAGCCAGACG GTGATGGCGC TGCTCGGGCT GCTCGCGGGC
AACGGATCGA CCTCGGGCGA GGCGCTGTTC GACGGCGAGA ACCTGCTGCG GATGAACACG
CGGCAACTGA ACGCGGTGCG CGGCGACCGG ATCGGGATGA TCTTTCAGGA CCCGATGACC
TCGCTCAATC CGTTCCTGAC GATCGAGCGG CAGATGACCG AGAGCCTGCA GCTTCACCGG
AAGATGTCGC GCAAGCACGC GCTCAAGCGG GCGATCGACG CGCTCGAGGC GGTCAGGATT
CCCGATGCGG CGCGCCGGAT CCGGATGTAT CCGCACGAGT TCTCGGGCGG CATGCGCCAG
CGCGTGATGA TCGCGATGGC GCTGCTGCTC GAACCGGAGA TCCTGATCGC CGACGAGCCG
ACCACCGCGC TCGACGTCAC CGTGCAGGCG CAGATCATCG AGCTGCTGCG CGAGCTGAAC
CGCGAGCGCG GCACGTCGAT CGTGCTGATC ACGCACGACA TGGGCGTGGT CGCGGGGCTC
GCCGACGACG TGATGGTGAT GTACGCGGGC CGCACGGTCG AATACGCGAG CGCCGGCGCG
ATCTTCTCCG CGCCGTCGCA TCCGTACACG ATCGGCCTGT TGAACGCGTT GCCGCGTCTC
GACGCGCCCG ACGACGTGCC GCTCGTCGCG ATTCCCGGCA ATCCGCCGCT GCCCGGCCAG
GGGCTGCTCG GCTGCGCATT CGCGAAGCGC TGCGCTCATG CATCGGAGCG ATGCGGCGTC
GAGCGCCCCG ATCTGATCGC CTATTCGGAC GCGGGCGCCG TGCGCGCGTG TCATCGGCCC
ATTGCGGAAA TCACGGGAGG GCTGCGATGA
|
|---|
| Protein sequence | MALLEVKDLG VRFTRREGEP VDAVSGVSFS LEAGRTLGIV GESGSGKSQT VMALLGLLAG
NGSTSGEALF DGENLLRMNT RQLNAVRGDR IGMIFQDPMT SLNPFLTIER QMTESLQLHR
KMSRKHALKR AIDALEAVRI PDAARRIRMY PHEFSGGMRQ RVMIAMALLL EPEILIADEP
TTALDVTVQA QIIELLRELN RERGTSIVLI THDMGVVAGL ADDVMVMYAG RTVEYASAGA
IFSAPSHPYT IGLLNALPRL DAPDDVPLVA IPGNPPLPGQ GLLGCAFAKR CAHASERCGV
ERPDLIAYSD AGAVRACHRP IAEITGGLR
|
|---|
| |