| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A0833 |
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| Symbol | rpoD |
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| ID | 3693975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007435 |
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| Strand | - |
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| Start bp | 1089393 |
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| End bp | 1091795 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637731087 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_335991 |
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| Protein GI | 76817579 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAGA CTACCGGCGG AAAAAAAGCG ACGGGCAAGG CGACTGAATC GACCACGAAG
GTCGCGCCGG CCCGCTCCGC GGCTTCCGCA AAGACGTCTT CGGCCCGCGC GGCGCACCCT
GAGAGGAAGA GAGCCGCGGC CGGCACCGCG AAGGCTGCGC CGGCGCCGAC GGCCAGCGCA
TCGCGGGTCG TCGTGAGGTC CGAGGCGAAG GCGGCGAAGC CGGCTTCGCC GCGGGCGAGT
GCGAAAAGCG CAAGGGGAGC GGCTGCCGCG CCGGACGAAA CGGCAGCTAC TCGAGCATCC
ACGGTTCAAC CGGCTGTAGT CCAGCAGCCG CGAGTCGATT TAGCCGGTAC GGCGAACTCC
ATGACGAAAA AGCTGAACGA AGTATCCGTC GATGACGACG CAAACCAGAG CGACGACCAG
CCTACCGCTG CGTCGGGCAA AGGCGAAAAG GCCAAGGCGC GCGACCGTCG CGCCAAGGAA
AAGGCGCTGC TGAAGGAAGC GTTCGCGACG AGCACGCCCG GCACGGCCGA GGAGCTCGAA
GAGCGCCGTA CGAAGCTGCG CGCGCTGATC AAGCTCGGCA AGGAGCGCGG CTTCCTCACG
TACGCCGAAA TCAACGACCA TCTGCCGGAC AACTTCACGG AAACGGAAGC GCTCGAAGGC
ATCATCGGCA CGTTCAACGA CATGGGCGTC GCGGTGTACG AGCAGGCGCC CGACGCCGAG
ACGCTGCTGT TGAACGACAA TGCGCCCGCC GCGTCGTCCG ACGATGAAGT CGAGGAGGAA
GCGGAAGTCG CGCTGTCGAC CGTCGATTCC GAATTCGGCC GCACGACCGA TCCGGTGCGG
ATGTACATGC GCGAGATGGG CACGGTCGAG CTGCTCACGC GCGAAGGCGA AATCGAGATC
GCGAAGCGGA TCGAGGACGG CCTGCGCCAC ATGGTGATGG CGATTTCCGC GTGCCCGACG
ACGATCGCCG ACATCCTCGC GATGGCCGAG CGCGTGGCGA ACGAGGAGAG CCGCGTCGAC
GAGCTCGTCG ACGGCCTGAT CGATCCGAAC GCCGCCGATA CCGACGGCTT CTCGGAGAAG
GACGCCGAGG AAATCGAGAA CGAGGACGCG GAAGCCGAAG AGGACGACGA AGAGGAAGAA
GAGGACGACG ACGGCGCCGC GCAGGCGACC GCCAACGCGG CCCAGCTCGA AGCGCTCAAG
CGCGCGTCGC TCGAGAAGTT CGCGCTCATC AGCGAATGGT TCGACAAGAT GCGCCGCGCG
TTCGAGAAGG AAGGCTACAA GTCGAAGTCG TACCTGAAGG CACAGGAAAC GATCCAGAAC
GAGCTGATGT CGATCCGCTT CACCGCGCGC ACCGTCGAGC GCCTGTGCGA TACGCTGCGC
GCGCAGGTCG ACGAAGTGCG CCAGGTCGAG CGTCAGATCC TGCACATCGT CGTCGACAAG
TGCGGGATGC CGCGCTCGGA GTTCATCGCG CGCTTCCCGG GCAGCGAGAC CGATCTCGAC
TGGGCCGAGA AGGTCGCGGC CGAAGGCCAT TCGTATGGGG CGATCCTGTC GCGCAACATT
CCGGCGATCC GCGAACAGCA GCAGCGCCTG CTCGACCTGC AGGCGCGTGT CGTGCTGCCG
CTCAAGGACC TGAAGGAAAC CAACCGCCAG ATGGCGGCGG GCGAACTGAA GGCGCGCCAG
GCGAAGCGCG AGATGACCGA GGCGAACCTG CGCCTCGTGA TCTCGATCGC GAAGAAGTAC
ACGAACCGCG GCCTGCAGTT CCTGGACCTG ATTCAGGAGG GCAACATCGG CCTGATGAAG
GCGGTGGACA AGTTCGAATA CCGTCGCGGC TACAAGTTCT CGACGTATGC GACGTGGTGG
ATCCGCCAGG CCATCACGCG CTCAATCGCG GACCAGGCGC GCACGATTCG GATTCCGGTT
CACATGATCG AGACGATCAA CAAGATGAAC CGCATCTCGC GGCAGATCCT GCAGGAAACC
GGCCTAGAGC CGGATCCGGC GACGCTCGCC GAGAAGATGG AGATGCCGGA GGACAAGATC
CGCAAGATCA TGAAGATCGC GAAGGAGCCG ATCTCGATGG AAACGCCGAT CGGCGACGAC
GACGATTCCC ATCTCGGCGA CTTCATCGAG GACACCAACA CGGTCGCGCC GGCGGATGCC
GCGCTGCATG CGAGCATGCG CGACGTCGTG AAGGACGTGC TCGATTCGCT GACGCCGCGC
GAGGCGAAGG TGCTGCGGAT GCGCTTCGGC ATCGAGATGA GCACCGATCA CACGCTCGAG
GAAGTCGGCA AGCAGTTCGA CGTCACGCGC GAGCGGATTC GTCAGATCGA GGCGAAGGCG
TTGCGCAAGC TGCGTCATCC GAGCCGTTCG GACAAGCTGA AGTCGTTCCT CGAGGGGAAC
TGA
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| Protein sequence | MAKTTGGKKA TGKATESTTK VAPARSAASA KTSSARAAHP ERKRAAAGTA KAAPAPTASA
SRVVVRSEAK AAKPASPRAS AKSARGAAAA PDETAATRAS TVQPAVVQQP RVDLAGTANS
MTKKLNEVSV DDDANQSDDQ PTAASGKGEK AKARDRRAKE KALLKEAFAT STPGTAEELE
ERRTKLRALI KLGKERGFLT YAEINDHLPD NFTETEALEG IIGTFNDMGV AVYEQAPDAE
TLLLNDNAPA ASSDDEVEEE AEVALSTVDS EFGRTTDPVR MYMREMGTVE LLTREGEIEI
AKRIEDGLRH MVMAISACPT TIADILAMAE RVANEESRVD ELVDGLIDPN AADTDGFSEK
DAEEIENEDA EAEEDDEEEE EDDDGAAQAT ANAAQLEALK RASLEKFALI SEWFDKMRRA
FEKEGYKSKS YLKAQETIQN ELMSIRFTAR TVERLCDTLR AQVDEVRQVE RQILHIVVDK
CGMPRSEFIA RFPGSETDLD WAEKVAAEGH SYGAILSRNI PAIREQQQRL LDLQARVVLP
LKDLKETNRQ MAAGELKARQ AKREMTEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK
AVDKFEYRRG YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKMN RISRQILQET
GLEPDPATLA EKMEMPEDKI RKIMKIAKEP ISMETPIGDD DDSHLGDFIE DTNTVAPADA
ALHASMRDVV KDVLDSLTPR EAKVLRMRFG IEMSTDHTLE EVGKQFDVTR ERIRQIEAKA
LRKLRHPSRS DKLKSFLEGN
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