| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A0423 |
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| Symbol | sctL |
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| ID | 3691961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1710b |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007435 |
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| Strand | - |
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| Start bp | 590084 |
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| End bp | 590953 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637730677 |
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| Product | type III secretion system protein HrpB |
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| Protein accession | YP_335582 |
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| Protein GI | 76819258 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00673327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTATTT GGTTGAGACG TCCCCGGATC GCTGAAATGG GGCCGATCAC GCCGAACAGC
TGCGCTCGAC TCGGCTTTTC CGGCGATGTT GTGCCGCGCG AATGCTTTGG TGAACTGATG
ACGATCGAGT CCGCCTATGC GGCGCTCGAC GCGGACCGCG ACGCCGTGCT CGCTGCCGCC
CGTCAGGAAG CCGACAGAGT GATGGCGGAG GCAGTGGCGA GAACGGAAGA GATGATCGCC
GCCGCACAGA GCGAATACGA TGCGGCTGCC GAGCGCGGCT ATCGAGACGG CTACGACCAA
GCGTTCGGCA AGTGGATGGA TCGCTTAGCC GATGTCGCGG ACGCGCAGAA CCGACTGCAA
CTGCGAATGC GCGAGCGGCT GGCCGACATC GTCGCATCGG CGGTCGAGCA AATCGTGCGC
GCCGAAAGCC GCGAGACGCT ATTCAAGCGC GCGTTGGCAT CGGTCGAGCG AATCGTGGAC
GGCGCGACAT ATTTGCGTGT CGTCGTGCAC GAGAACGATC TGGATCAGGC GAGAGCGATC
TTCGGCACGC TCGAAGCGCG CTGGCGCGAG TTCGGCCGCC CGATCGCGAT GTCGGTGGTG
GCGGACAAGC GGCTTGCTCC AGGCAGTTGC GTATGCGAGT CCGATTTCGG CGCAATCGAT
GCGAGCCTGG ATACGCAGCT GCGCGCGATG CGCGGCGCCG TCGCGCGTGC GCTCAAGCGT
TCGATTGAAG AAGCCGGCGC GAACGAGTGC GATGCGACAC GCCGTGACGA ATCGATCGGC
ATCGAGACGG ATCGGGACGG CGAGCGTGAC GCACGGAACG CCGAGCAGGA TGCGGGGGAC
GCGGGCGCGA GCGCGGGGGG GCGGGCATGA
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| Protein sequence | MAIWLRRPRI AEMGPITPNS CARLGFSGDV VPRECFGELM TIESAYAALD ADRDAVLAAA
RQEADRVMAE AVARTEEMIA AAQSEYDAAA ERGYRDGYDQ AFGKWMDRLA DVADAQNRLQ
LRMRERLADI VASAVEQIVR AESRETLFKR ALASVERIVD GATYLRVVVH ENDLDQARAI
FGTLEARWRE FGRPIAMSVV ADKRLAPGSC VCESDFGAID ASLDTQLRAM RGAVARALKR
SIEEAGANEC DATRRDESIG IETDRDGERD ARNAEQDAGD AGASAGGRA
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