Gene BURPS1710b_A0418 details

Gene Information

• Locus tag: BURPS1710b_A0418
• ID: 3694211
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007435
• Strand: -
• Start bp: 583962
• End bp: 585854
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637730672
• Product: YscC/HrcC family type III secretion outer membrane protein
• Protein accession: YP_335577
• Protein GI: 76817445
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.17202
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGTGTC CAGAATGGTT CGACACTCGT GATCGCCTAT CGGAAGGAGT ACGACGAAAC 
CCCTTCGGAA ACGCTCGCGC GCTGATTCAA GATGATTCTC CTGCGCTCAC TCAATTCCAA 
AGAACGATGA AAGCGAAAGC GCTGTTGTGC GCGGCATGGT GCGTCGCGAT ATTTGGCACC 
ATCGGGATCG GCGCCGCGAA CGCGATGCCC GTGCGCTGGA GGAGTACGGT CGTGCATGTC 
GTGCTGGAAG GCAAGGATCT AAAGGACGTA CTGAGGGATT TTGCCGCGAG TCAAGGCGTC 
GCGACATCGA TTGCCGGCAA TGTTCAAGGT ACCGTCACGG GCCGATTCGA TCTGTCGCCC 
CAGCGCTTTC TCGATACGCT CGCCGCGACT TTCGGATTCG TGTGGTTCTA CGATGGCAAT 
ATCTTGTCCA TCACAAATGC AAACGATATG ACGCGGCAAG TCTTGCCGCT CGATCACGCT 
TCGATCGGCG AATTGCGTTC CGCGTTGCGC CAGATCGGCA TGGACGACAA GCGCTTTCCG 
ATCTTCTACG ACGAGGTGTC CGGCACCGTG CTCGTCAGCG GTCCCGCCCA GTATGTCCAG 
ATCGTAACTG ATATCGCGCA GCGGCTCGAC ACGCTGTCGG GCCGCCGAAA CGGCTCGACA 
ATCCGCATCT TCAAGTTGAA GCACGCGTGG GCGGCCGATC GCAACGTGCA GATCGACGGA 
AACACGGTGA CCATGCCCGG GATCGCGACC GTGCTGGCGA ACCTGTACCG CGTGCGAGGA 
AGGGCGGGAA CCGGTCAGTC GAGTGCGGCA CCCGGCGTGC AGCGGGTGCA GCCGATGGGC 
GACGTTTCCG GCAGTGCGTA TGGCGGGAAC CGGCTGATGC CTCCATTGCC GCCGAGCATG 
ATGGGGGGAG GCCGCGGCGA CGCATTCGCC AAGGGGGCGT CGATCGACGG CGAAAGCGGG 
GGAGCCGCGA GCGCCGCGCC TGGCGGAGCG CCCCGGACGG AGGAGGCGTC CGCGGAGCGC 
GACGAGTTGC CGATCATCCA GCCCGATCCG ATGACGAACT CGGTGTTGAT CCGCGATTTG 
CCCGATCGCC TTGCACAGTA TGCGCCGCTC ATCCAGCAAC TCGACATACG GCCCAGGCTT 
ATCGAAATCC AGGCGCACAT CATGGAGATC GACAACGACT TGCTTCGGGA GATCGGCGTC 
GACTGGCGCG CGCATAACAG CCACGGCGAT ATTCAGACAG GCACGGGCAA TACGGCGCAA 
AACGATTATT CGGGCGGCCA GATCAATCCG TTCTTCGGTA CGACGACGCT TGCGGGCAAC 
GCAGTTGTCA ACGCGGCGCC CGCCGGCGTG TCGGTCACGG CGGTCGTCGG GGACGCGGCT 
CGACATTTGA TGGCGCGGGT GAGCGCGCTG CAGTCGACCT CGAAGGTGAA GATCGACGCA 
TCGCCACTTG TCGCGACGCT CGACAATTCG GAGGCCGTAA TGGATAACAC GACGCGCTTT 
TTCGTCAAGG TATCGGGTTA CGCGTCGGCG GAACTCTACA GCGTGTCGAC GGGTGTTTCG 
CTGCGCGTTC TGCCGATGAT CGTGCAAGAC GGTAGCGAGA CCCGGATCAA GATGAATGTT 
CACGTGACGG ACGGGCAACT GACAGGCGAC CAGGTCGATA ACCTGCCGGT CATCACGAGC 
AGCGAAATCA ATACGCAAGC GTTCGTCGGT CAGGGGCAGA GCCTGCTGAT CGCCGGCTAC 
AGTACGGACA AGCGCGCGAA CGGTGTGGCG GGCGTGCCTT GGCTGTCGAA GATCCCATTG 
CTCGGTGCGC TGTTCCGATA CCACAGCGAT TCGCAGAACC ACATGGAGCG CGTATTCCTG 
TTGTCGCCGC GGATTATCGA CCCGGGCACG TGA 

 

Protein sequence

MGCPEWFDTR DRLSEGVRRN PFGNARALIQ DDSPALTQFQ RTMKAKALLC AAWCVAIFGT 
IGIGAANAMP VRWRSTVVHV VLEGKDLKDV LRDFAASQGV ATSIAGNVQG TVTGRFDLSP 
QRFLDTLAAT FGFVWFYDGN ILSITNANDM TRQVLPLDHA SIGELRSALR QIGMDDKRFP 
IFYDEVSGTV LVSGPAQYVQ IVTDIAQRLD TLSGRRNGST IRIFKLKHAW AADRNVQIDG 
NTVTMPGIAT VLANLYRVRG RAGTGQSSAA PGVQRVQPMG DVSGSAYGGN RLMPPLPPSM 
MGGGRGDAFA KGASIDGESG GAASAAPGGA PRTEEASAER DELPIIQPDP MTNSVLIRDL 
PDRLAQYAPL IQQLDIRPRL IEIQAHIMEI DNDLLREIGV DWRAHNSHGD IQTGTGNTAQ 
NDYSGGQINP FFGTTTLAGN AVVNAAPAGV SVTAVVGDAA RHLMARVSAL QSTSKVKIDA 
SPLVATLDNS EAVMDNTTRF FVKVSGYASA ELYSVSTGVS LRVLPMIVQD GSETRIKMNV 
HVTDGQLTGD QVDNLPVITS SEINTQAFVG QGQSLLIAGY STDKRANGVA GVPWLSKIPL 
LGALFRYHSD SQNHMERVFL LSPRIIDPGT