Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1710b_3002 |
Symbol | ompA |
ID | 3690856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1710b |
Kingdom | Bacteria |
Replicon accession | NC_007434 |
Strand | + |
Start bp | 3308360 |
End bp | 3309034 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637729458 |
Product | outer membrane protein a precursor |
Protein accession | YP_334381 |
Protein GI | 76811968 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATAAAC TTTCAAAGCT CGCGTTCATT GCAGCTACCG CAGTTATGGC TGCATCCGCT TCGGCACAGT CGGTGCCGGC GTCGCGACAA GCCGTGAATG ACAACTGGGT GAATGGCACG GGCGAATGGG TGTGGATGAA CGGCACGAAC GAGCTCTGCT GGCGCGATGC GTTCTGGACG CCGGCCACCG CCAACGCCAA GTGCGATGGC GCACTGGTCG CCCAGGCACC GGCACCGGCG CCGGTCGCAC CGGTTGCTCC GGCCATCACG AGCCAGAAGA TTACGTACCA AGCCGATACG CTGTTCGACT TCGACAAGGC CGTCCTGAAG CCGGCCGGCA AGCAGAAGCT TGACGAACTG GCCGCGAAGA TCCAGGGCAT GAACGTCGAA GTGGTCGTGG CCACGGGCTA CACGGACCGC ATCGGTTCGG ACAAGTACAA CGACCGTCTG TCGCTGCGCC GTGCGCAAGC CGTCAAGTCG TACCTCGTCA GCAAGGGTGT CCCGGCGAAC AAGGTCTACA CGGAAGGCAA GGGCAAGCGC AACCCGGTCA CGGGCAACAC CTGCAAGCAG AAGAACCGCA AGCAGCTCAT CGCCTGCCTC GCACCGGACC GCCGCGTGGA AGTCGAAGTG GTCGGCACGC AGGAAGTGCA GAAGACGACC GTTCCGGCGC AGTAA
|
Protein sequence | MNKLSKLAFI AATAVMAASA SAQSVPASRQ AVNDNWVNGT GEWVWMNGTN ELCWRDAFWT PATANAKCDG ALVAQAPAPA PVAPVAPAIT SQKITYQADT LFDFDKAVLK PAGKQKLDEL AAKIQGMNVE VVVATGYTDR IGSDKYNDRL SLRRAQAVKS YLVSKGVPAN KVYTEGKGKR NPVTGNTCKQ KNRKQLIACL APDRRVEVEV VGTQEVQKTT VPAQ
|
| |