Gene BURPS1710b_2060 details

Gene Information

• Locus tag: BURPS1710b_2060
• Symbol: fimA
• ID: 3690523
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007434
• Strand: +
• Start bp: 2230229
• End bp: 2230861
• Gene Length: 633 bp
• Protein Length: 210 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 637728516
• Product: FimA
• Protein accession: YP_333455
• Protein GI: 76810250
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3539] P pilus assembly protein, pilin FimA

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.12007
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGATAATGC GGTCCGTCGC GACGAATCAA GACCAATGCA TTGCAAAGCA TTTCTCGCGT 
GCGATGCGAA TACGTCCGGC AAATCGTCCC AATCCCATTA GTCACGTTAC GGAACCAGCC 
ATGAAAAAAG CTCTCCTGTC CGCCGTCGCC TGCGCCGCGT TGTCCACGTC CGCATTCGCC 
GCCGGCACCG GCACCCTCAA CTTCACGGGC GAGATCGTCG CCGGCGCGTG CGGCATCGAC 
GCGGGCTCGG TGGACCAGAC CGTGCGCCTC GGCTTCGTCC CCGCGAACAC GTTCAAGGCG 
GCGGGCGACA AGTCGACGCC GCAGAACTTC GACATCAAGC TCGTCGACTG CGACACGAGC 
GTCGCGAAGA ACGCGTACTT CACGTTCACG GGCACGTCGA ACGCGACGCA GCCGAAGCTG 
ATCGCCACCG TCGGCTCGGC GACGAACGTC GGCATCCGTC TGCAATCGGC GTCGGGCGAA 
TACCTCGACA ACGGCGCGGA GCAGAAAGGC CCGGTCGTGC TGAGCAACGG CACGAGCGTC 
GCGCGCTTCG CCGCGATGTA CGAATCGACC GCGGCGAGCG TGACGCCAGG CACGGCCGAC 
GGCGTCGCGA ACTTCACGGT TCGCTACCAG TAA 

 

Protein sequence

MIMRSVATNQ DQCIAKHFSR AMRIRPANRP NPISHVTEPA MKKALLSAVA CAALSTSAFA 
AGTGTLNFTG EIVAGACGID AGSVDQTVRL GFVPANTFKA AGDKSTPQNF DIKLVDCDTS 
VAKNAYFTFT GTSNATQPKL IATVGSATNV GIRLQSASGE YLDNGAEQKG PVVLSNGTSV 
ARFAAMYEST AASVTPGTAD GVANFTVRYQ