Gene BURPS1710b_1954 details

Gene Information

• Locus tag: BURPS1710b_1954
• Symbol: hfq
• ID: 3689668
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007434
• Strand: -
• Start bp: 2126386
• End bp: 2127036
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 637728410
• Product: Hfq protein
• Protein accession: YP_333353
• Protein GI: 76809198
• COG category: [R] General function prediction only
• COG ID: [COG1923] Uncharacterized host factor I protein
• TIGRFAM ID: [TIGR02383] RNA chaperone Hfq

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00000000604734
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAATC CTGCAGAATC CCATCCGCAA AACGACTTCA TCAATGCCGC GCGCAAGGAA 
CGCAAGCGCG TCGAAATTTA TCTCGTCAAC GGTATTCGAC TGACGGGTTG CATCGAGTCG 
TTCGACCAGT ATCTGGTGAT GCTGCGCACG CCCGTCGGCC TGCAAGGCAT CTATAAACGC 
GCCATCTCGA CGATCCAGCT CGACACGGGC GGCTCCCGTC CGGGCGGACG CGGCCCGCGC 
GCGGGCGGCG CCCACGGCGG CGGCGGACGC CCCGGCGGAC GCGAAGGCGG CGGTCATGGC 
CCGTACGGCT CGCACGGCGG CTCGCGCGAA CCCCGCGGCG ACGGCGGCGG CTATGGCGCT 
CGCGAACCGC GTGGCGACGG CGGTTATGGC TCCCGCGAAT CGCGCGGCGA CGGCGGCTAC 
GGCTCCCGCG AACCGCGTGG CGACGGCGGC TACGGTTCCC GCGAACCGCG TGGCGACGGC 
GGCTATGGCG CGCGCGAGCC GCGTGAACCG CGCGAGCCCC GCGAGTCTTA CGGCGCGCCG 
CAAGAAGGCG CATCGACGCC GTCCGGCACG CAGGAACGCA ACGGCAACGG CAACGGCCCG 
GTGATCGTCA CGCGCCGTCG CCGTTCGCTC GGCCCGACCG ACGGCCAATA A 

 

Protein sequence

MANPAESHPQ NDFINAARKE RKRVEIYLVN GIRLTGCIES FDQYLVMLRT PVGLQGIYKR 
AISTIQLDTG GSRPGGRGPR AGGAHGGGGR PGGREGGGHG PYGSHGGSRE PRGDGGGYGA 
REPRGDGGYG SRESRGDGGY GSREPRGDGG YGSREPRGDG GYGAREPREP REPRESYGAP 
QEGASTPSGT QERNGNGNGP VIVTRRRRSL GPTDGQ