Gene BURPS1710b_0980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBURPS1710b_0980 
Symbol 
ID3691682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia pseudomallei 1710b 
KingdomBacteria 
Replicon accessionNC_007434 
Strand
Start bp1029195 
End bp1031180 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content69% 
IMG OID637727436 
ProductO-antigen polymerase family protein 
Protein accessionYP_332392 
Protein GI76809217 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3307] Lipid A core - O-antigen ligase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCGAT GGAGCGATCG CCGGGAATGG GTCTTGCGCG GCATGGCGGC CGTCCGGCGG 
CGGATAGGGC GCGGGCGGCG CGGCGGCCGC GCACCGCGAT GGTGCGCCGC GCGATGTCGG
TGCGTGTCGG ACGCCCGCGC CCGCACAGCA CGGGGTTTTT TTTGTATAGT GCGCCGGTTG
CTGACACCCG GTTTGCTCAT GCCTTCTTCC TTTCTGCGTT CTCTATCGCT GATCGCGCTT
GCCGTCGCCC TGATCCTGCC GTATGCGATC ACGAACCACA CCTATCCGAT CCCGACCTTC
TATTCCGAAT TCGCCGCGTT CGCGCTGTAT TGGGGGCTCG GCGCGAGCGT CGTCCTGCTC
GTGAAAGCCG AGCGCGCCGA GCAGCCGTTC GCGGCGCCGA TGGCGCTCGT CGCGCCGCTC
GGGTTCGGCG CGGTATTGCT TGCGCAGATC GCGCTGCTGC CGCTGCGCCA GCCCTCGATG
AACTGGCTCG CGATGGGCTA CCTGCTCGGC GCGCTCGTCG CGATGCAGGC CGGGTATGCG
CTCGCGCGCG TGAACATGGT CGATATGGTC GCGCGGATGA TCGCGGGCGC GACGATCGTC
GGCGGCGTCG TCGCGGTCGC CTGCCAGTTC GTGCAGCTGT TCCATCTGGA GACGACGTTC
TCGCCGTTCG TCGTGTCGTA TGGCGTGACC GTCGAGCGCC GCCCGTACGG CAACATGGCG
CAGGCCAACC ACTTGGCGAC CTATATCGCG TTCGCGCTCG CGGGCGCGCT CTATCTCGTG
CAGACGCGGC GGATGCCGGC GCTCGCGTGG GCGGCGCTAT CGGCGCTGCT GTCGGTCGGG
CTCGCGCTGA CCGTGTCGCG CGGGCCTTGG CTGCAGGTCG GCGTGATGGT GGTCGCCGGC
TTCTGGATGG CGTTCGCGCA GGCCCGGCGC GACCCGGCGG CGAGCCGCGC GCGCGCGTGG
GCGATTCCCG TCGTGCTCGG CGTGCTGTTC GTCGCGGTCA ACGTCGCGGT GCGCTGGGCC
AACGTGCACT ACCATCTCGG CCTCGCGGAA TCCGCCGCGG ACCGCATGCG CGACGCCGGT
CAGATCGCGC CGCGCCTCGC GCTCTGGAAG TACGGCCTCA CGATGTTCCG CGAGCATCCG
CTGCTCGGCG TCGGCTGGGG CGAGTTCCCG ATCCACCAGT TCGAGCTCGC GCGCCGGCTG
GGCGGCGTCG AGATCGCGAA CAACTCGCAC GACATCTTCA TCGATCTGCT CGCGAAATCC
GGCTTGCTCG GCCTCGGCGT GCTGTTCGTC GCGCTCGTCG CGTGGTTCGT GCGCGCGCTG
CGCGTGCCGC ATACCGAGAG CCGCGTGTTC GGTTTCGCGC TCGTCGGCAT CGTGCTGATG
CATGCGCTCG TCGAATATCC GCAGCAGTAC ACGTTCTTCC TGCTGCCCGT GATGTTCGTG
ATCGGCCTGC TCGAGACGAA GCCGCTACGC GCGCTGCCCG GCCGCGCGGC GTTCGTGCTG
TTCGCGGCGC TATCGGTGGC GGGGCTTGCG TCGCTGTATC CGATCCTGCG CGACTACCAG
CGCGCCGAGG TGCTGTATTA CGGCACGAAT CCGGCCGAGC AATACCGCGC GCACCAGTCG
TTCCTGTTCG GCGCCTGGGG GGATTACGGC GCGGCGACGC TGCTCGCGAT CTCGCGCGAG
AACCTGCCGG CGAAGCTCGC CGCCCACGAA AGCGCGATCG CGCTGCTGCC GGGCGAGACG
GTGCTGCGCC GCTACGCGGT GCTGCAGGCG CTCGACGGCC GCGAGACCGA CGCGCTCGAT
ACGATCGAGC GTTTGCGCGT GTTCGCGGAG GAGCTGCACG ACTGGCCGGT GCAGCTCGCC
GCGCTGTACA AGCTGCTCGA CGACCAGCCG TCGCTGAAGT CGTTCAAGGC GGCGCTCGTC
GCGAAATACG GGACGCCCGC GGCGAACCTG TCGGCGGACG ACGAGGAAGA CGACGGCGAC
GATTGA
 
Protein sequence
MTRWSDRREW VLRGMAAVRR RIGRGRRGGR APRWCAARCR CVSDARARTA RGFFCIVRRL 
LTPGLLMPSS FLRSLSLIAL AVALILPYAI TNHTYPIPTF YSEFAAFALY WGLGASVVLL
VKAERAEQPF AAPMALVAPL GFGAVLLAQI ALLPLRQPSM NWLAMGYLLG ALVAMQAGYA
LARVNMVDMV ARMIAGATIV GGVVAVACQF VQLFHLETTF SPFVVSYGVT VERRPYGNMA
QANHLATYIA FALAGALYLV QTRRMPALAW AALSALLSVG LALTVSRGPW LQVGVMVVAG
FWMAFAQARR DPAASRARAW AIPVVLGVLF VAVNVAVRWA NVHYHLGLAE SAADRMRDAG
QIAPRLALWK YGLTMFREHP LLGVGWGEFP IHQFELARRL GGVEIANNSH DIFIDLLAKS
GLLGLGVLFV ALVAWFVRAL RVPHTESRVF GFALVGIVLM HALVEYPQQY TFFLLPVMFV
IGLLETKPLR ALPGRAAFVL FAALSVAGLA SLYPILRDYQ RAEVLYYGTN PAEQYRAHQS
FLFGAWGDYG AATLLAISRE NLPAKLAAHE SAIALLPGET VLRRYAVLQA LDGRETDALD
TIERLRVFAE ELHDWPVQLA ALYKLLDDQP SLKSFKAALV AKYGTPAANL SADDEEDDGD
D