Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1710b_0489 |
Symbol | oprB |
ID | 3688665 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1710b |
Kingdom | Bacteria |
Replicon accession | NC_007434 |
Strand | - |
Start bp | 496966 |
End bp | 498480 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637726945 |
Product | carbohydrate porin |
Protein accession | YP_331903 |
Protein GI | 76810534 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAGA AGACCCTCCA TCAAATGCTC GTCAAATCCG GCGTCGCCTC CGGCCTGCCG TTGTTGCTGT CGCTCGGCAT CGTGCAGCCC GCGCTCGCGC AGGCGTCGAG CCCCGCGGCG GCCCCCGCCG AGAACGCCGC GCCGCCGGCA CCCGCCACGC GGGCCCCGGA TGGCGTGCCC GGCGGAAACG GCGCGACAGC CGCGCAGACG GACGCCGCCC CCACCGGCTT CTGGGATCGC TCGAACCTGT TCGGCGACAT GGGCGGCCTG CGCACCAAGC TCGGCGATCA CGGGATCACG CTGAATCTGC AGGAAACGAG CGAGTACCTG CGCAACCTGT CGGGCGGCAC AAGCCGCGGC GGCGCCTATG ACGGCCTCAC GCAATTCGGC TTCAGCGTCG ACACCGAAAA GGCGATCGGG CTGCCGGGCG GCACGTTCAA CGTGTCGGGC CTGCAGATTC ACGGCACGAG CCTCACGGCG CGCAACCTGC AGTTGCTGCA GACGGCAAGC GGCATCGAGG CCGAGGCCAC GACGCGCCTC TGGGAGCTGT GGTACCAGCA GTCGTTCGCG AACGGCCGCG CCGACGTGAA GGTCGGCCAG CAAAGCCTCG ACCAGGAATT CATGGTGAGC CAGTACGCGA GCACGTTCAT CAACGCGACG TTCGGCTGGC CCGTGCTGCC CGCCGTCGAC ATGCCGGCGG GCGGCCCCGC CTATCCGCTG TCGTCGCTCG GCGTGCGGCT GCGCGCGAAG CCATCCGATG CATGGACCGT GATGGCGGGC GTGTTCGACG GCAATCCGGC GGGCGGCGTG GGCGACGCGC AACAGCTCAA TCGGCACGGC ACGAATTTCA ACCTGCGCAA CGGCGCGCTC TTCATCGGCG AGCTCCAGTA CGCGCTCAAC GCGCCGCCCG CCGATCCGAA GGCGCCGCAG GCGGGGCTGC CCGGCATGTA CAAGCTCGGC GTCTGGTACA ACTCCGAGCG CTTCGCCGAT CCGCGCTACG ACACGAACGG CGTGCCGCTC GCCGATCCGG CGAGCAACGG CGTCGCGGCG ACGCATCGCG GCAACTACGG CTTCTATGCG GTCGCGGACC AGATGGTATG GCGGCCGGGC GCGGACAGCC CGCGCTCGCT GAACGTGTTC GCGCGCGTGA TGGGCGCGCC CGGCGATCGC AACGCCGTCG ACTTCACGCT GAACGCGGGC GTCACGCTCA AGGCGCCGTT CGCCGGACGC GACAACGACA CGGCGGGGCT TGCCGTCAGC TACGCGAAGA TCGGTTCGCG CGCGCGCGGC GCCGACGGCG ACACCGGCGT GTTCCAGACG CCCGGCTATC CGGTGCGCCG CGCGGAAACG CTGATCGAGG CGACTTACCA GTATCAGGTG ACGCCGTGGT GGCAACTGCA GGGGGATTTC CAGTACGCAT TCCGGCCGGG CGGCGGCATT CCGAACCCGA ACGAGCCGGG CTCGCGTATC GGCAACGAAG CGATCGTCGG CGTACGCACG ACGATCACGT TCTGA
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Protein sequence | MKKKTLHQML VKSGVASGLP LLLSLGIVQP ALAQASSPAA APAENAAPPA PATRAPDGVP GGNGATAAQT DAAPTGFWDR SNLFGDMGGL RTKLGDHGIT LNLQETSEYL RNLSGGTSRG GAYDGLTQFG FSVDTEKAIG LPGGTFNVSG LQIHGTSLTA RNLQLLQTAS GIEAEATTRL WELWYQQSFA NGRADVKVGQ QSLDQEFMVS QYASTFINAT FGWPVLPAVD MPAGGPAYPL SSLGVRLRAK PSDAWTVMAG VFDGNPAGGV GDAQQLNRHG TNFNLRNGAL FIGELQYALN APPADPKAPQ AGLPGMYKLG VWYNSERFAD PRYDTNGVPL ADPASNGVAA THRGNYGFYA VADQMVWRPG ADSPRSLNVF ARVMGAPGDR NAVDFTLNAG VTLKAPFAGR DNDTAGLAVS YAKIGSRARG ADGDTGVFQT PGYPVRRAET LIEATYQYQV TPWWQLQGDF QYAFRPGGGI PNPNEPGSRI GNEAIVGVRT TITF
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