Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A2995 |
Symbol | rpoN |
ID | 4903649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | - |
Start bp | 2917776 |
End bp | 2919251 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640146098 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001077024 |
Protein GI | 126457119 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.342471 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGCCA CGCTCGCGTT GCAAATGCGT CAACACCTGG CGCTCACGCC GCGCTTGCAG CAGTCGCTGC GTTTGCTCCA GCTTTCGTCG CTCGAGTTTC AACAGGAACT GCGTCAGGCG CTCGATACCA ATCCGTTTCT CGAAGACGTG CAATCGCCCG ACGACGATGC TGCCGAAGCC GGGCCGAAGC CGGGCGAGAC GCCTGCCGCC GACGCAAACG CGAGGGCGGA CGACGGCTAC GCCGAGCGCG ACGAGGGCCC GTTCGCGACC GACGCGTCGC CGCCCGCCGG CCAGGACGTG CCGCTGACGG CGGAGCTCTC GGCGCGCGGC TCGAGCCGGC GCTCCGACGA CGCGTCGGAT CTCGAGCCCG GCGACTGGAT GACGGCCGAG CCGACGCTGC ACGAGCATCT GCACGACGCG CTGCGCCTTT GCCAGCTCAC CCGGCGCGAC CGCACGCTCG CGCGCATGAT CATCGACGCG CTCGACGACG ACGGCTATCT GCGCCAGGCG CTGCCCGAGC TCGCGGCGGC GGCCGATCCG CTGCTGCATC CGGCCGAGCA GGAACTGCTC GTCGCGCTGC GGCTCGTGCA GTCGCTCGAT CAGCCCGGCA TCGGCGCGCG CACGCTGTCC GAATGCCTGT TGCTGCAGCT CGACGCGATG CCGGCGGACA CGCCGGGCGT CGAATGCGCG AAGGAGATCG CCGCGCATCA CCTCGAGCGT CTCGCACGCC GCGAGACGGC CGAGATGCAG CGCCGCATCG GCTGCGACAC GCACACGCTG CGCATCGCAT GCACGCTCGT GCGCCGGCTC GATCCGCGCC CCGGCAACCA GTACGGCAGC ACGGCGGGCA ACTATGTCGT CCCCGATGTG ATCGTGCGGC AGGTGCGCAA CGACTGGCTC GTCACGATCA ACCCCGCCGT GATGCCGCGC GCGCGCATCC ATCGCCGCTA CGCGGAGCTG TTCGCGCAAT CGAGCGGCTC GAATCAGTCG CCGCTCGGCC AGCAACTGCA GGAGGCGCGC TGGCTGATCC GCAACGCGCA GAAGCGTTTC GACACGATCC GCCGCGTCGG CGAGTGCATC GTCGAGCGGC AGCGCGACTT TTTCCGCTAC GGCGAGATCG CGCTGAAGCC GCTCGTGCTG CGCGACATCG CCGACGAGCT CGGCCTGCAC GAATCGACGA TCTCGCGCGC GACCGGCAAC AAGTACATGT CGACGCCGCA CGGCACGTTC GAGTTCAAGC ACTTCTTCCC GCGCAAGCTC GAGGCGGCGG GCAAGGGCGC GTGCTCGGCG GCCGTCGCGA GGGTGCTGAT CCGCGACATG ATCGCGGCCG AACAGGCGAT CGATCCGCTG TCGGACGTCG CGCTCGCGCA GCGTCTGGCG GGGCGCGGGA TCGTGCTCGC GCGCCGCACC GTCACGAAGT ATCGGCAGGC GATGAAGATC CCGCCCGCGG AATTGCGCCG CCGCGCGCCT CTATGA
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Protein sequence | MSATLALQMR QHLALTPRLQ QSLRLLQLSS LEFQQELRQA LDTNPFLEDV QSPDDDAAEA GPKPGETPAA DANARADDGY AERDEGPFAT DASPPAGQDV PLTAELSARG SSRRSDDASD LEPGDWMTAE PTLHEHLHDA LRLCQLTRRD RTLARMIIDA LDDDGYLRQA LPELAAAADP LLHPAEQELL VALRLVQSLD QPGIGARTLS ECLLLQLDAM PADTPGVECA KEIAAHHLER LARRETAEMQ RRIGCDTHTL RIACTLVRRL DPRPGNQYGS TAGNYVVPDV IVRQVRNDWL VTINPAVMPR ARIHRRYAEL FAQSSGSNQS PLGQQLQEAR WLIRNAQKRF DTIRRVGECI VERQRDFFRY GEIALKPLVL RDIADELGLH ESTISRATGN KYMSTPHGTF EFKHFFPRKL EAAGKGACSA AVARVLIRDM IAAEQAIDPL SDVALAQRLA GRGIVLARRT VTKYRQAMKI PPAELRRRAP L
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