| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A2384 |
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| Symbol | rpoD |
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| ID | 4906056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1106a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009078 |
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| Strand | - |
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| Start bp | 2359522 |
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| End bp | 2361732 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640145489 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001076416 |
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| Protein GI | 126456327 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGGTCCG AGGCGAAGGC GGCGAAGCCG GCTTCGACGC GGGCGAGTGC GAAAAGCGCA
AGGGGAGCGG CTGCCGCGCC GGACGAAACG GCAGCTACTC GAGCATCCAC GGTTCAACCG
GCTGTAGTCC AGCAGCCGCG AGTCGATTTA GCCGGTACGG CGAACTCCAT GACGAAAAAG
CTGAACGAAG TATCCGTCGA TGACGACGCA AACCAGAGCG ACGACCAGCC TACCGCTGCG
TCGGGCAAAG GCGAAAAGGC CAAGGCGCGC GACCGTCGCG CCAAGGAAAA GGCGCTGCTG
AAGGAAGCGT TCGCGACGAG CACGCCCGGC ACGGCCGAGG AGCTCGAAGA GCGCCGTACG
AAGCTGCGCG CGCTGATCAA GCTCGGCAAG GAGCGCGGCT TCCTCACGTA CGCCGAAATC
AACGACCATC TGCCGGACAA CTTCACGGAA ACGGAAGCGC TCGAAGGCAT CATCGGCACG
TTCAACGACA TGGGCGTCGC GGTGTACGAG CAGGCGCCCG ACGCCGAGAC GCTGCTGTTG
AACGACAATG CGCCCGCCGC GTCGTCCGAC GATGAAGTCG AGGAGGAAGC GGAAGTCGCG
CTGTCGACCG TCGATTCCGA ATTCGGCCGC ACGACCGATC CGGTGCGGAT GTACATGCGC
GAGATGGGCA CGGTCGAGCT GCTCACGCGC GAAGGCGAAA TCGAGATCGC GAAGCGGATC
GAGGACGGCC TGCGCCACAT GGTGATGGCG ATTTCCGCGT GCCCGACGAC GATCGCCGAC
ATCCTCGCGA TGGCCGAGCG CGTGGCGAAC GAGGAGAGCC GCGTCGACGA GCTCGTCGAC
GGCCTGATCG ATCCGAACGC CGCCGATACC GACGGCTTCT CGGAGAAGGA CGCCGAGGAA
ATCGAGAACG AGGACGCGGA AGCCGAAGAG GACGACGAAG AGGAAGAAGA GGACGACGAC
GGCGCCGCGC AGGCGACCGC CAACGCGGCC CAGCTCGAAG CGCTCAAGCG CGCGTCGCTC
GAGAAGTTCG CGCTCATCAG CGAATGGTTC GACAAGATGC GCCGCGCGTT CGAGAAGGAA
GGCTACAAGT CGAAGTCGTA CCTGAAGGCA CAGGAAACGA TCCAGAACGA GCTGATGTCG
ATCCGCTTCA CCGCGCGCAC CGTCGAGCGC CTGTGCGATA CGCTGCGCGC GCAGGTCGAC
GAAGTGCGCC AGGTCGAGCG TCAGATCCTG CACATCGTCG TCGACAAGTG CGGGATGCCG
CGCTCGGAGT TCATCGCGCG CTTCCCGGGC AGCGAGACCG ATCTCGACTG GGCCGAGAAG
GTCGCGGCCG AAGGCCATTC GTATGGGGCG ATCCTGTCGC GCAACATTCC GGCGATCCGC
GAACAGCAGC AGCGCCTGCT CGACCTGCAG GCGCGCGTCG TGCTGCCGCT CAAGGACCTG
AAGGAAACCA ACCGCCAGAT GGCGGCGGGC GAACTGAAGG CGCGCCAGGC GAAGCGCGAG
ATGACCGAGG CGAACCTGCG CCTCGTGATC TCGATCGCGA AGAAGTACAC GAACCGCGGC
CTGCAGTTCC TGGACCTGAT TCAGGAGGGC AACATCGGCC TGATGAAGGC GGTGGACAAG
TTCGAATACC GTCGCGGCTA CAAGTTCTCG ACGTATGCGA CGTGGTGGAT CCGCCAGGCC
ATCACGCGCT CAATCGCGGA CCAGGCGCGC ACGATCCGGA TTCCGGTTCA CATGATCGAG
ACGATCAACA AGATGAACCG CATCTCGCGG CAGATCCTGC AGGAAACCGG CCTAGAGCCG
GATCCGGCGA CGCTCGCCGA GAAGATGGAG ATGCCGGAGG ACAAGATCCG CAAGATCATG
AAGATCGCGA AGGAGCCGAT CTCGATGGAA ACGCCGATCG GCGACGACGA CGATTCCCAT
CTCGGCGACT TCATCGAGGA CACCAACACG GTCGCGCCGG CGGATGCCGC GCTGCATGCG
AGCATGCGCG ACGTCGTGAA GGACGTGCTC GATTCGCTGA CGCCGCGCGA GGCGAAGGTG
CTGCGGATGC GCTTCGGCAT CGAGATGAGC ACCGATCACA CGCTCGAGGA AGTCGGCAAG
CAGTTCGACG TCACGCGCGA GCGGATTCGT CAGATCGAGG CGAAGGCGTT GCGCAAGCTG
CGTCATCCGA GCCGTTCGGA CAAGCTGAAG TCGTTCCTCG AGGGGAACTG A
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| Protein sequence | MRSEAKAAKP ASTRASAKSA RGAAAAPDET AATRASTVQP AVVQQPRVDL AGTANSMTKK
LNEVSVDDDA NQSDDQPTAA SGKGEKAKAR DRRAKEKALL KEAFATSTPG TAEELEERRT
KLRALIKLGK ERGFLTYAEI NDHLPDNFTE TEALEGIIGT FNDMGVAVYE QAPDAETLLL
NDNAPAASSD DEVEEEAEVA LSTVDSEFGR TTDPVRMYMR EMGTVELLTR EGEIEIAKRI
EDGLRHMVMA ISACPTTIAD ILAMAERVAN EESRVDELVD GLIDPNAADT DGFSEKDAEE
IENEDAEAEE DDEEEEEDDD GAAQATANAA QLEALKRASL EKFALISEWF DKMRRAFEKE
GYKSKSYLKA QETIQNELMS IRFTARTVER LCDTLRAQVD EVRQVERQIL HIVVDKCGMP
RSEFIARFPG SETDLDWAEK VAAEGHSYGA ILSRNIPAIR EQQQRLLDLQ ARVVLPLKDL
KETNRQMAAG ELKARQAKRE MTEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK
FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKMNRISR QILQETGLEP
DPATLAEKME MPEDKIRKIM KIAKEPISME TPIGDDDDSH LGDFIEDTNT VAPADAALHA
SMRDVVKDVL DSLTPREAKV LRMRFGIEMS TDHTLEEVGK QFDVTRERIR QIEAKALRKL
RHPSRSDKLK SFLEGN
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