Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A1231 |
Symbol | |
ID | 4903474 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | - |
Start bp | 1166676 |
End bp | 1167974 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640144337 |
Product | outer membrane porin |
Protein accession | YP_001075266 |
Protein GI | 126455983 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCTCGG ACGAATCGCG GCCGTCGCTT CGATTCGAAA ATTTTATTTT GTTTCCGCTG ATTTCCGCCC CTATACTCCA TTCCACTAAA GGCACACAGT TCCATATATG GAACACAAAA AGCCAAAACT CAGCCGTGGG AACGCGCGTG GCCGATCGTT TCGCGCGCGG CCACCGCCCG CGTCATTTGG AGCAAAGGTC AGGAGATCAG ATGGTCAAGC ATGCGGCAGC AACATTACTC GGCGCGCTCG CCGTCGCCGG CGCGTGGGCG CAGAGCAGCG TCACGCTGTA CGGCAGCCTC GATGCCGGCG TCGCGTACGT GAACAACGTC GGCGGCGGCG CGAAGTGGTC GATGATTCAG GGCAACACGC AGCCCGATCG ATGGGGGCTG AAGGGCGTCG AGGATCTGGG CGGCGGTCTG AAGGCGATCT TCCAGCTCGA AAACGGCTTC TATACGAACA ACGGCCAGAT GGCGGCGGCG GGCACGATGT GGAACCGTCA GGCGTTCGTC GGCCTGAATT CCGACCGGCT CGGCGCGCTG ACGCTCGGCC ACCAGACGCC GTTCAACTTC GACTGGCTCG ACCCGCTGTC GAGCGCATTC CTCGCGCAGA GCTGGTATGC GTTCCATCCC GGCAACCTCG ACCAGCTCGC GGACACCAGC ACCGTGCCGT TCAACAACTC GGTCAAGTAC CGGTCACCCG TCTTTGCGGG CTTCACGGTG GGCGCGATGC TCGGCTTCGG CAACACGACG AACTTCTCGA CCGGCCGCAC GATGAGCTTC GGCGTGAACT ACGCGAACGG CCCGTTCAAG GCGGCCGCCG TCTATTCGAA CGAGCACGAC CAGGCGTTCC CGATGGCGAC CGTCGGCGGC ATCGCCGGGC CGGGCGGCAC GTTCCAGGGC ATGCCCGTCG CGAGCTATGT CGCGAAGAAG GCGCAGAACA TGGGCGCGGG CCTGTCGTAC CGCTTCGGCC CGCTGCTCGT GCACGGCCTT TACACGCGCG TGAAACTGCA GGCGAACGGC CACTCGGATA CGTTCCAGAG CTACGACGCC GGCGCGAACT ACCAGAGCTC GCCGTTCAAC GTGATCGCGG GCGGCGCGGC GACTTCGACG CTCGCCGGCC GCCGCTGGAG CCAGTTCGAG CTCGGCGACA CGTATTCGCT GTCCAAGCGC ACGCAGCTCT ACGTGAACGT GCTGTACGAG CACGCGAGCG GCAACGCGAA GGCCGCGTTC TTCACGGCGG GCGCGTCGAG CACGGCGAAT CAGGTGATTG TCCTGACGGG GATTCACCAC TCGTTCTGA
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Protein sequence | MSSDESRPSL RFENFILFPL ISAPILHSTK GTQFHIWNTK SQNSAVGTRV ADRFARGHRP RHLEQRSGDQ MVKHAAATLL GALAVAGAWA QSSVTLYGSL DAGVAYVNNV GGGAKWSMIQ GNTQPDRWGL KGVEDLGGGL KAIFQLENGF YTNNGQMAAA GTMWNRQAFV GLNSDRLGAL TLGHQTPFNF DWLDPLSSAF LAQSWYAFHP GNLDQLADTS TVPFNNSVKY RSPVFAGFTV GAMLGFGNTT NFSTGRTMSF GVNYANGPFK AAAVYSNEHD QAFPMATVGG IAGPGGTFQG MPVASYVAKK AQNMGAGLSY RFGPLLVHGL YTRVKLQANG HSDTFQSYDA GANYQSSPFN VIAGGAATST LAGRRWSQFE LGDTYSLSKR TQLYVNVLYE HASGNAKAAF FTAGASSTAN QVIVLTGIHH SF
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