Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A0835 |
Symbol | |
ID | 4904834 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | - |
Start bp | 832401 |
End bp | 834362 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640143941 |
Product | macrolide-specific ABC-type efflux carrier |
Protein accession | YP_001074871 |
Protein GI | 126458054 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.077145 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCGGGC CGCTGCTTCA GCTCACGCGC GTCACGCGCC GCTTTCCGGC GGGCGAGAAG GACGTCGTCG TGCTCGACGA CGTGAGCCTG TCGATCGACG CGGGCGAGAT CGTCGCCATC GTCGGCGCGT CCGGCTCGGG CAAGTCCACG CTGATGAACA TCCTCGGCTG CCTCGACCAT CCGAGCTCGG GCAGCTACAC CGTCGGCGGG CGCGAGACGA GCGAGCTCGA AAGCGACGAG CTCGCGCGCC TGCGCCGCGA GCATTTCGGC TTCATCTTCC AGCGCTATCA CCTGCTGCCG CACCTGTGCG CGGCCGAGAA CGTCGAAATG CCCGCCGTCT ACGCGGGCAG CGCGCAGGCG CAGCGGCGCG AGCGCGCGCT CGCGCTGCTC GCGCGTCTCG GCCTGTCCGA TCGCGCGAGC CACCGGCCGA GCCAATTGTC GGGCGGCCAG CAGCAGCGCG TGAGCATCGC GCGCGCGCTG ATGAACGGCG GCGAGGTGAT CCTCGCCGAC GAGCCGACGG GCGCGCTCGA TTCGAAGAGC GGCCGCGACG TGATCCGCGT GCTGCGCGAG CTGAACGCGC TCGGCCATAC GGTCATCATC GTCACGCACG ACGAGCAAGT CGCCGCGCAT GCGCGCCGCA TCATCGAGAT CAGCGACGGC CGCATCGTCG GCGACCGCCT CAATCCGCAC GCGGACGCGG CCGATGCCGC GCCCGACGCG AGCGGCGGCG CGCAGCCGCG GCGCGCGCGC CGGCTGTCGG CGGGCGTCGG CCGCTTCGCG GAAGCGTTCC GGATGGCGTG GATCGCGCTC GTGTCGCACC GGCTGCGCAC GCTGCTCACG ATGCTCGGGA TCATCATCGG GATCACGTCG GTCGTGTCGA TCGTCGCGAT CGGCGAAGGC GCGAAGCGCT ACATGCTCGA CGAAATCGGC AGCATCGGCA CCAACACGAT CAACGTGTAC CCGGGCGCCG ACTGGGGCGA CAGCCGCGCG GACGCGATCC AGACGCTCGT GGCCGCCGAC GCCGCCGCGC TCGCCGAGCA GATCTACATC GACAGCGCGA CGCCCGAGAC GTCGCGCAGC CTGCTGCTGC GCTATCGGAA CGTCGATGTC AACGCGCTCG TGAGCGGCGT CGGCGAGCGC TTCTTCCAGG TGCGGGGGAT GAAGCTCGCG CAAGGCATCG CGTTCGGCGC CGACGAGGTG CGCCGCCAGG CGCAAGTCGC GGTGATCGAC GAGAACACGC GCCGCAAGCT GTTCGGCGCG AATCCGAACC CGCTCGGCGA AGTGATCCTG ATCGACAATC TGCCGTGCGT CGTGATCGGC GTGACCGCGA GCAAGAAGAG CGCGTTCGGC GACATGAAGA ACCTGAACGT CTGGGTGCCG TACACGACGG CGTCCGGGCG CCTGTTCGGC CAGCGGCATC TCGACAGCAT CACCGTGCGC GTGCGTGACG GCCAGCCGAG CGACGCGGCC GAACGGAGCC TCACGAAGCT GATGCTGCAG CGGCACGGCC GCAAGGATTT CTTCACGTAC AACATGGACA GCGTCGTCAA GACGGTCGAG AAGACCGGGC AGTCGCTCAC GCTGCTGCTG TCGCTGATCG CGGTGATCTC GCTCGTCGTC GGCGGGATCG GCGTGATGAA CATCATGCTC GTGTCGGTGA CCGAGCGCAC GCGCGAGATC GGCATCCGGA TGGCGGTCGG CGCGCGGCAG ACCGACATCA TGCAGCAGTT TCTCGTCGAA GCCGTGACCG TCTGCCTGAT GGGCGGCGCG ATCGGCATCG TGCTGTCGTT CGGCATGAGT TTCGTGTTCT CGCTGTTCGT CGACCAATGG AAAATGGTGT TCTCCGCCGC CTCGATCGCA TCGGCGTTCC TGTGCTCGAC GCTGATCGGC GTCGTGTTCG GCTTCATGCC CGCGCGCAAC GCGTCGCGGC TCGATCCGAT CGATGCGCTC GCGCGCGATT GA
|
Protein sequence | MTGPLLQLTR VTRRFPAGEK DVVVLDDVSL SIDAGEIVAI VGASGSGKST LMNILGCLDH PSSGSYTVGG RETSELESDE LARLRREHFG FIFQRYHLLP HLCAAENVEM PAVYAGSAQA QRRERALALL ARLGLSDRAS HRPSQLSGGQ QQRVSIARAL MNGGEVILAD EPTGALDSKS GRDVIRVLRE LNALGHTVII VTHDEQVAAH ARRIIEISDG RIVGDRLNPH ADAADAAPDA SGGAQPRRAR RLSAGVGRFA EAFRMAWIAL VSHRLRTLLT MLGIIIGITS VVSIVAIGEG AKRYMLDEIG SIGTNTINVY PGADWGDSRA DAIQTLVAAD AAALAEQIYI DSATPETSRS LLLRYRNVDV NALVSGVGER FFQVRGMKLA QGIAFGADEV RRQAQVAVID ENTRRKLFGA NPNPLGEVIL IDNLPCVVIG VTASKKSAFG DMKNLNVWVP YTTASGRLFG QRHLDSITVR VRDGQPSDAA ERSLTKLMLQ RHGRKDFFTY NMDSVVKTVE KTGQSLTLLL SLIAVISLVV GGIGVMNIML VSVTERTREI GIRMAVGARQ TDIMQQFLVE AVTVCLMGGA IGIVLSFGMS FVFSLFVDQW KMVFSAASIA SAFLCSTLIG VVFGFMPARN ASRLDPIDAL ARD
|
| |