Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_A0566 |
Symbol | |
ID | 4905817 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009078 |
Strand | + |
Start bp | 557090 |
End bp | 559492 |
Gene Length | 2403 bp |
Protein Length | 800 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640143672 |
Product | capsular polysaccharide biosynthesis/export protein |
Protein accession | YP_001074602 |
Protein GI | 126456078 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGTTCGCGC ATGCGCAAAT CGTCCCTTTC GTTCCGTCTG CATCCGCCGG CGCGGACGCG CGTTCGGCGG TGCCGCTGCC GCCGATCGAC GGCCTGCCGG CGGCGGACGG CCTGAGCGTG CGGCAACGCG ACGCGCTTCA GCCGCCGCTG CCGGGCGCGA AGCTGACGAA GGACGCCACG ACGAAAGACG GCCTGTTGAA GGACGGCGCC GCGCTGAACG AGCCGCCGCG CCCCTGCGGG CCGCTCGGAT GCCGTGGCGA AGCGATCGAT TGCCCGCCGT CGGCCGACGG CCGGCCGACG TCCATTACGC GCCGGGCGGA CGGCACGCCC GAATTGCCGG ATCCGTGCGG GCGGCCGCGC GCCGCTTCGC AACCGGCGCT GACCGATTTT CAGGTCTTCG TGCAGCAGAG CACGGGCCGC GCGTTGCCGC TGTTCGGCTA CAACTTCTTT TCGACGACGA CGACCTACCG GTCGCTCGAC AACGTTCCGG TTCCCGACGA TTACGTGCTC GGCCCCGGCG ACGAAGTGCT GCTGCACGCG TGGGGCGGCG TCGCGGGCGA TCAGCGCCTC GTCGTCGACC GCAACGGTCA GGTGAGCATT CCGGGCGTCG GTGTCGTGAC GGTGGCGGGC GCGCGCGCGT CCGAGCTCGA TTCGCTGCTG CGCGGCGGGC TTGGCCGATA TTTCACGGAT TTCAACGTGA ATGCGGCGCT CGGGCGTCTG CGATCGATCC CGGTGTATGT CGTCGGCAAG GCGATGTCGC CCGGCAGCTA CACGGTGCCC GGCACGTCGA CGATCATCGG CGCGTTGTTC GCGAGCGGCG GCCCCGCGTT CAACGGCTCG ATGCGCGCGG TGGCGCTGTA TCGCAATGGC CGGCAGATCG CCGCGCTCGA CGTCTACGGC TTTCTCACGC GCGGCGCGGT GAAGGACGAT GTCCATCTGC TGCCGGGCGA CGTCATCGTC ATTCCGCCCG CCGGGCCGCG CGTCGCGCTG ACGGGCGCGC TCGACGCGCC CGGCATCTAC GAGCTGCGCA AGACGAGCGA AACGTTGCGC GAGCTGCTCG ACGACGCGGG CGGCGTCACC GCGCTCACGA GCCTCGACCG CGTGATGATC GAACGGGTGA ACCCGGCCGA CGGCGCCGCG CCGCGTTCCG TGCAGGAAGT GCGGCTCGAC GAAGCGGGGC TCGCGACGGT CGTGAAGGAC GGCGACATCG TGACGCTGTC GATGGTGTCG CAGAAATTCT CGAACGCCGT GACGCTGCGC GGCAACGTCG CCGCGGCGCT CAGGTATCCG TACAAACCGG GCATGACGCT CGCCGATTTG CTGCCGTCCC CGGAGGCCGT GCTGACGCCC GACTACTTCA CGCGCAAGAA CATTCTCGTC GAATACGCGA AGAGCGGCGG CGCCGACCGG CGGCCGTTCG ACGGCATCCG CAATCTCGTC GACGAGCCCA ACTGGCACTA CGCGATCATT CAGCGGCTCG ACCCCGTCAC GCTGACCGAG AACGTGATCG CGTTCAACCT GCGCGCGGTG ATGACGAAAG GCAGCGCCGA GGCCGGCATC GCGCTGCAGC CCGGCGACGT GGTGACGATT TTCGGCAAGC GGGACCTGCG CAACCCGGTC GACGACAACA AGAGCCTCGT TCGCGTGGAC GGCGAAGTGC GCGCACCCGG CGTCTACCAG CTCAACGCGG GCGAATCGCT GCGCGAGCTG CTGCAGCGCG CGGGCGGCCT GACAAGCAAC GCGTATGTGT TCGGCCTCGA GTTCACGCGC GAATCCACCC GCAGCCAGCA GCAGCAGAAC CTGAACGCCG CGCTCGACCG CGCGACGTTG CAGGCGAACA GCAAGCTCGC CGCGGCGCTC GCGAACCTGC CGAGCGGCGA CACGCAGTAT CTGCAGGCTC AGATGGCGGC CGCGCAGCAG GCGCAACTCG CGCGGCTGCG CGAGCTCAAG CCGACGGGGC GCGTGTCGCT CGAGCTGAGC ACGCGCGCGA GCCGCATCGG CGATCTGCCC GATCTGCCGC TGAACGACGG CGATGCGATT TACGTGCCGC CGGTGCCGGC GTTCGTGACC GTCTACGGCG CGGTCGACAA TCAGAACGCG GTGATCTGGA AGCTGCATCG AACGGTCGCC GATACGTTGA GGGTCGCGGG CGTCCAGCGG GACATCGCGG ACCTCGACGC CGCATTCGTG CTGCGCGCCG ACGGCAGCGT CGCGTCGGCG AGCAGCGCCG GCTGGTTCGG CAGCTTCGGC GCGCTCGAGC TGATGCCGGG CGACGCGCTC GTGGTTCCCG AGAAGCTCGA CCGGCGCACC GCGATGACGA AGTTCCTCGC CGGCCTCAAG GACTGGTCGC AGGTGCTGGC CAATTTCGGC CTGGGCGCGG CGGCAATCAA GGTGCTCAAG TAA
|
Protein sequence | MFAHAQIVPF VPSASAGADA RSAVPLPPID GLPAADGLSV RQRDALQPPL PGAKLTKDAT TKDGLLKDGA ALNEPPRPCG PLGCRGEAID CPPSADGRPT SITRRADGTP ELPDPCGRPR AASQPALTDF QVFVQQSTGR ALPLFGYNFF STTTTYRSLD NVPVPDDYVL GPGDEVLLHA WGGVAGDQRL VVDRNGQVSI PGVGVVTVAG ARASELDSLL RGGLGRYFTD FNVNAALGRL RSIPVYVVGK AMSPGSYTVP GTSTIIGALF ASGGPAFNGS MRAVALYRNG RQIAALDVYG FLTRGAVKDD VHLLPGDVIV IPPAGPRVAL TGALDAPGIY ELRKTSETLR ELLDDAGGVT ALTSLDRVMI ERVNPADGAA PRSVQEVRLD EAGLATVVKD GDIVTLSMVS QKFSNAVTLR GNVAAALRYP YKPGMTLADL LPSPEAVLTP DYFTRKNILV EYAKSGGADR RPFDGIRNLV DEPNWHYAII QRLDPVTLTE NVIAFNLRAV MTKGSAEAGI ALQPGDVVTI FGKRDLRNPV DDNKSLVRVD GEVRAPGVYQ LNAGESLREL LQRAGGLTSN AYVFGLEFTR ESTRSQQQQN LNAALDRATL QANSKLAAAL ANLPSGDTQY LQAQMAAAQQ AQLARLRELK PTGRVSLELS TRASRIGDLP DLPLNDGDAI YVPPVPAFVT VYGAVDNQNA VIWKLHRTVA DTLRVAGVQR DIADLDAAFV LRADGSVASA SSAGWFGSFG ALELMPGDAL VVPEKLDRRT AMTKFLAGLK DWSQVLANFG LGAAAIKVLK
|
| |