Gene BURPS1106A_A0240 details

Gene Information

• Locus tag: BURPS1106A_A0240
• Symbol: sciM
• ID: 4905370
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: -
• Start bp: 228605
• End bp: 229090
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 640143348
• Product: SciM protein
• Protein accession: YP_001074284
• Protein GI: 126457863
• COG category: [S] Function unknown
• COG ID: [COG3157] Hemolysin-coregulated protein (uncharacterized)
• TIGRFAM ID: [TIGR03344] type VI secretion system effector, Hcp1 family

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.939428
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGCAGG ATATTTTTCT GAAGATCGAC GGCATCAACG GTGAATCCCT CGACGACAGC 
CACAAGGACG AGATCGAAGT CCTGAACTGG AACTGGGAGA TTCAGCAGGA ATCGACGATG 
CACACGGGCA GCGGCGGCGG CGCCGGCAAG GCGAGCGTGA AGGATCTGAC GTTCGAGCAC 
GCGATCGACC GCGCGAGCCC CAACCTGATG AAGTACGCGC TGACCGGCAA GCACGTCGAT 
CAGGCGGTGC TCGTGATGCG CAAGGCGGGC GGCAATCCGC TCGAATACCT GAAGCTCACG 
ATGAGCGACG TGATCATCAC GCGCGTGCGG CCGTCGGGCA GCCGCGACGA CACCGAGCGC 
AGCCGCGAGA CGGTATCGCT GTCGTTCGCG AAGGTGAAGC AGGAGTATGT CGTGCAGAAC 
GCGCAGGGCG GCAGCGGCGG CGCCGTCACG ACGAGCTTCG ACATCAAGGG CAACAAGGAA 
GCCTGA 

 

Protein sequence

MAQDIFLKID GINGESLDDS HKDEIEVLNW NWEIQQESTM HTGSGGGAGK ASVKDLTFEH 
AIDRASPNLM KYALTGKHVD QAVLVMRKAG GNPLEYLKLT MSDVIITRVR PSGSRDDTER 
SRETVSLSFA KVKQEYVVQN AQGGSGGAVT TSFDIKGNKE A