Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_2402 |
Symbol | mfd |
ID | 4902881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009076 |
Strand | + |
Start bp | 2365386 |
End bp | 2368955 |
Gene Length | 3570 bp |
Protein Length | 1189 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640135630 |
Product | transcription-repair coupling factor |
Protein accession | YP_001066662 |
Protein GI | 126453184 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCGA AGGACGGATT TTATAATACG TCTTTCGCCG CGATGCGCCG CGCCGAGCTC GTCCGCCATC CGGCGTTCGC CAACCAGCCG CTCGTTATGT CAGACAACGC CTCCCCTTCG CAGTCCCCCG TCGCGCTCGT CAAGGCGGGC CAGCGCTTCG CCTTCGACGG CGCACACGGC TCCGCCGACG CGCTCGTCAT CGCCCGCTAT CTCGCCGCGC ACCGCGCGCA GGTGCCGCTT CTCGCCGTGA TCTGCGCGAA CGCGGTCGAC GCGCAACGGC TCGCGCAGGA GCTCGCCTAC TTCGCGCCCG ACGCGCGCGT GCGCGTGCTG CCCGACTGGG AGACGCTGCC GTACGATACG TTCTCGCCGC ACCAGGATCT CGTGTCCGAG CGGCTCGCGA CGCTGCACGA CCTCGGCGAA GGCCGCTGCG ACATCCTGCT CGTGCCCGCG ACGACGGCGC TCTACCGGAT GCCGCCCGCG TCGTTCCTCG CCGCGTACAC GTTCTCGTTC ACGCAGGGCG AGCGGCTCGA CGAAGCGAAG CTGAAGGCGC AGCTGACGCT CGCCGGCTAC GAGCACGTGA GCCAGGTCGT GCGGCCCGGC GAATACTGCG TGCGCGGCTC GCTGATCGAC CTGTTCCCGA TGGGCTCGCC GCTGCCGTAC CGGATCGATC TGTTCGACGA TCAGGTCGAC TCGATCCGCG CGTTCGATCC GGACACGCAG CGCAGCCTCT ACCCGGTGCG CGACGTGCGC CTGCTGCCCG GCCGCGAATT CCCGTTCGAC GAGGCCGCGC GCACCGCGTT CCGAAGCCGC TGGCGCGAGA CGTTCGAGGG CGACCCGAGC CGCGCGCCGA TCTACAAGGA CATCGGCAAC GGCGTGCCGT CGGCCGGCAT CGAGTATTAC CTGCCGCTCT TCTTCGACGA GACGGCGACG CTCTTCCACT ATCTGCCCGA GCGCGCGCAG CTCGTGTTCA CGGGCGATCT CGACGCGGCG ATCAAGCGCT TCACGGCCGA CACGAAGCAG CGCTACGCGT TCCTGTCGCA CGATCGCGAG CGGCCGATCC TCGAGCCGCA GCGCCTGTTC CTCTCCGACG ACGATTTCTA CCTGCTCGCC AAGCCGTTCG CGCGGATCGT GCTGCCCGCG CAGCCGTCGG GCGGCTGGGC CGCGCCGCTG CCGAATCTCG CGCTCGAGCG CCACGCGGAC GCGCCGCTCG CCGCGTTCGC CGCGTATCTC GAAACGACGA AGAACCGCGT GCTTTTCACC GTCGAATCGG CGGGCCGCCG CGAGACGATC GCGCAACTGT TCGCCGAGCA CCATCTGCGG CCGGCGGGCA GCGACAGCTT CGCCGCGTGG CTCGCGAGCG ACGAGCGCTT CGCGCTCGGC GTCGCGCCCC TCGCGAACGG CTTCGCGGTG CCGGGCGAGG GTTACGCGAT CGTCACCGAG ACCGAGCTGT ACGGCGCGCT CGGCCGCCGC GCGGGACGCC GCCGCCAGGA ACAGGCGAGC AACGTCGACG CGATGGTGCG CGATCTGTCC GAGCTGAAGG TGGGCGACCC GGTCGTCCAT GCGCAGCACG GGATCGGCCG CTACATGGGG CTCGTGTCGA TGGATCTCGG CGAAGGCGAC ACCGAGTTCC TGCATCTCGA ATACGCGGGC GACAGCAAGC TGTACGTGCC CGTCGCGCAA CTGCACGTGA TCTCGCGCTA CAGCGGCGCG GACCCGGACA GCGCGCCGCT GCACGCGCTC GGCTCCGGCC AGTGGGAGCG CGCGAAGCGC CGCGCCGCGC AGCAGATCCG CGATACGGCC GCCGAGCTGC TGAACCTGTA CGCGCGCCGC GCGGCGCGCG AGGGCCACGC GTTCGGGCTC GACCCGCGCG ACTACGTGAA GTTCGCCGAC AGCTTCGGCT TCGAGGAAAC GCCGGACCAG GCCGCGGCGA TCGCGGCCGT GATCGGCGAC ATGACAAGCG GCAAGCCGAT GGACCGCCTC GTGTGCGGCG ACGTCGGCTT CGGCAAGACC GAGGTCGCGC TGCGCGCGGC ATTCATCGCG GTGATGGGCG GCAAGCAGGT CGCGCTGCTC TCGCCGACCA CGCTGCTCGC CGAGCAGCAC ACGCAGACCT TCGCCGACCG CTTCGCGGAC TGGCCGGTGC GCATCGTCGA GCTGTCGCGC TTCAAGACCG CGAAGGAAGT GAATGCGGCG ATCGCGCAGA TCAACGAAGG CAGCGTCGAC ATCGTGATCG GCACGCACAA GCTGCTGTCG TCGGACGTGC AGTTCAAGCG CCTCGGCCTC GTGATCATCG ACGAGGAGCA CCGCTTCGGC GTGCGCCAGA AGGAAGCGCT GAAGGCGCTG CGCGCGGAAG TGGACGTGCT CACGCTGACC GCGACGCCGA TCCCGCGCAC GCTCGGCATG GCGCTCGAAG GGCTGCGCGA TTTCTCGGTG ATCGCGACCG CGCCGCAGAA GCGGCTCGCG ATCAAGACCT TCGTGCGCCG CGAGGAAGAA AGCGTGATCC GCGAGGCGAT GCTGCGCGAG CTCAAGCGCG GCGGCCAGGT GTACTTCCTG CACAACGAGG TCGAGACGAT CGAGAACCGC AAGGCGATGC TCGAGGAGCT GGTGCCCGAG GCGCGCATCG TGATCGCGCA CGGCCAGATG CACGAGCGCG AGCTCGAACG CGTGATGCGC GATTTCGTCG CGCAGCGCGC GAACGTGCTG CTGTGCACGA CGATCATCGA GACCGGCATC GACGTGCCGA GCGCGAACAC GATCATCATG CACCGCGCGG ACAAGTTCGG CCTCGCGCAG TTGCACCAGT TGCGCGGGCG CGTCGGACGC TCGCACCATC AGGCATACGC GTACCTGCTC GTGCACGATC CGCAAGCGCT GACGAAGCAG GCGCAGCGCC GGCTCGAGGC GATCCAGCAG ATGGAGGAGC TCGGCTCGGG CTTCTATCTC GCGATGCACG ACCTCGAGAT CCGCGGCACC GGCGAAGTGC TCGGCGACAA GCAGTCGGGC GAGATCCACG AGATCGGCTT CCAGCTCTAC ACCGAGATGC TGAACGATGC GGTGAAGGCG CTGAAGAACG GCAAGGAGCC GGACCTGACC GCGCCGCTCG CCGCGACGAC CGAGATCAAC CTGCACGCGC CCGCGATCCT GCCCGCCGAC TATTGCGGCG ACGTGCAGGA GCGGCTGTCG CTGTACAAGC GGCTCGCGAA CTGCGAGCAC GGCGATGCGA TCGACGGCAT CCAGGAGGAG CTGATCGACC GCTTCGGCAA ACTGCCGCCG CAGGCGCACG CGCTCGTCGA GACGCACCGG CTGCGGCTCG CCGCGAAGCC GCTCGGCATC GTGAAGATCG ACGCGAGCGA AGCGGCGATC GGGCTGCAGT TCGTGCCGAA TCCGCCGATC GATCCGATGC GGATCATCGA CATGGTGCAG AAGCACCGGC ACATCAAGCT CGCGGGCCAG GACAAGCTGC GCATCGAGAC GCGCACGCCG GACCTCGCGG TGCGCGTGTC GACGGTGAAG GAAACGCTGC GCGCGCTCGG CCAGCCGCAG CAGCCGCGCG CGCAGGCGGC GGCGCGGTAG
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Protein sequence | MKSKDGFYNT SFAAMRRAEL VRHPAFANQP LVMSDNASPS QSPVALVKAG QRFAFDGAHG SADALVIARY LAAHRAQVPL LAVICANAVD AQRLAQELAY FAPDARVRVL PDWETLPYDT FSPHQDLVSE RLATLHDLGE GRCDILLVPA TTALYRMPPA SFLAAYTFSF TQGERLDEAK LKAQLTLAGY EHVSQVVRPG EYCVRGSLID LFPMGSPLPY RIDLFDDQVD SIRAFDPDTQ RSLYPVRDVR LLPGREFPFD EAARTAFRSR WRETFEGDPS RAPIYKDIGN GVPSAGIEYY LPLFFDETAT LFHYLPERAQ LVFTGDLDAA IKRFTADTKQ RYAFLSHDRE RPILEPQRLF LSDDDFYLLA KPFARIVLPA QPSGGWAAPL PNLALERHAD APLAAFAAYL ETTKNRVLFT VESAGRRETI AQLFAEHHLR PAGSDSFAAW LASDERFALG VAPLANGFAV PGEGYAIVTE TELYGALGRR AGRRRQEQAS NVDAMVRDLS ELKVGDPVVH AQHGIGRYMG LVSMDLGEGD TEFLHLEYAG DSKLYVPVAQ LHVISRYSGA DPDSAPLHAL GSGQWERAKR RAAQQIRDTA AELLNLYARR AAREGHAFGL DPRDYVKFAD SFGFEETPDQ AAAIAAVIGD MTSGKPMDRL VCGDVGFGKT EVALRAAFIA VMGGKQVALL SPTTLLAEQH TQTFADRFAD WPVRIVELSR FKTAKEVNAA IAQINEGSVD IVIGTHKLLS SDVQFKRLGL VIIDEEHRFG VRQKEALKAL RAEVDVLTLT ATPIPRTLGM ALEGLRDFSV IATAPQKRLA IKTFVRREEE SVIREAMLRE LKRGGQVYFL HNEVETIENR KAMLEELVPE ARIVIAHGQM HERELERVMR DFVAQRANVL LCTTIIETGI DVPSANTIIM HRADKFGLAQ LHQLRGRVGR SHHQAYAYLL VHDPQALTKQ AQRRLEAIQQ MEELGSGFYL AMHDLEIRGT GEVLGDKQSG EIHEIGFQLY TEMLNDAVKA LKNGKEPDLT APLAATTEIN LHAPAILPAD YCGDVQERLS LYKRLANCEH GDAIDGIQEE LIDRFGKLPP QAHALVETHR LRLAAKPLGI VKIDASEAAI GLQFVPNPPI DPMRIIDMVQ KHRHIKLAGQ DKLRIETRTP DLAVRVSTVK ETLRALGQPQ QPRAQAAAR
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