| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_2058 |
|---|
| Symbol | |
|---|
| ID | 4902003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | - |
|---|
| Start bp | 2040937 |
|---|
| End bp | 2045301 |
|---|
| Gene Length | 4365 bp |
|---|
| Protein Length | 1454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640135288 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001066323 |
|---|
| Protein GI | 126451956 |
|---|
| COG category | [R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0457] FOG: TPR repeat
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGGTA TGTACGAACA AAGCAAGGCG GCCAAGCGTC GCTACCGTGA CGGGGATTTC
GCGAGTCGGT ATTTCGTCGG CGACGGCATC GACGTCGGCG CAGGTCCGGA CGGACTTGGC
CGCTATCGGC GACAGTTCGC GGCCATGCGT TCCGTGCGCG AGTGGGACCT GGCAGACGGC
GATGCGCAAC TGCTCGCCGG CGTGAGCGAC AACACGTTCG ATTTCCTGCA TTCCTCGCAT
TGCCTGGAGC ACATGCGTGA CGCGGTCGAA GCGCTGCATA GCTGGGTGCG CGTCGTGAAG
CCCGGGGGGT ATTTGGTGAT CTGCGTTCCT GATGAAGACA TGTATGAACA GGGCGTGTAT
CCGAGCCGGT TCAACCCTGA CCATAAGTGG ACGTTCACGA TTCAGAAGCC GCAGGGTGCC
AGTTGGTCGC CTCGATCCAT CAATCTGCTC GAAATGCTGA TTCCGTTGTC GGGCGTGCTG
GAGATCGAGC GGATTCAACG GGTACAAGAG TTTTTCGACG ACACGTTGCA TGGTCGGGAC
CAGACGCTCA TGCCCAATGT GGAATGTGCG ATTGAACTCG TGCTGCGCAA GCGCGGTGCG
GCTGGCGCAA TCATGGGCGA CGTGCGGCCG GCGGCGGCGG AGGGCGCCGC GGCCATGCTG
CCGTGCGCGC GCGCCGGAAC CGGGCGCTTC GATGCGCCCG CCGGCCGCGA GGCGCTGATG
CTGCTGGACA GCGGGCATCG CGACGCCGCC GAGCGCAAGG CGCTCGAAGC ACTGGTCAGG
GAACCGGCGG ACTGCACGGC CATGGACGTG CTCGAACGTC TGTATCTCGA TTCGGCGCGC
TACGCGGAAT GTGCCGATAT CCTGGAGAAA CTGGTTGCGT ATGCGCCGAA TAACGCCGGC
GCCTGGAACA ACCTGGGTTG CTGCTATGGC GAGCTGAGGC GTTTCCCGCA GGCTCGCGCG
GCATTCCAGC GCGCGGTCGA CGCCAATCCG GAGTATGTGA CCGCGTATGG CGGATTGGCT
GCCATGCACT ATGCGCTCGG CGATCCGGCG AGCGCGGAAG CGACCTACCG CGCCGTGCTC
GCACGCTCGC CGGAGCACGT CGATTCGTGC GTGAATCTGG CCAACTGCAT GCTGGCCCAA
GAGAAAGTGG AGGATGCCAG GCCGTACATC GAGCGCGCCG GTGAAAAATT GTTGCCCGAC
CTGAACAAGC CGAAGGATGT CGCGCTCTGC GCGCCGAGGG AGGGTTTGAC GGTGCCGTAT
CGAAGCCGCA TCGAAAATCG TCCGATCTTC GAAAGCATGC ACGCGCGGCT CGGTATGTCG
CTGCTCATGC TCGGACGCGC GACCGAAGGT CTGCGCTTGC TGGAGTGGCG GCTCGGCAGT
GCGTTCGTGC CGGGTTTCGA CGCGCGGCGC GCCCAGCGGA TGTGGCGCGG CGAGCCGTTG
CGCGGGAAGT CGCTGCTGCT GCTGTGGGAG CAGGGCTATG GCGACGTTTT GCAGGGGCTG
CGGCACGTGA GCCGGCTGGC GGAGTTGGCC GAGCGTATTT ACCTGCCTGC CGACGCCGCC
GTGCGAGAGC TGTTCGAAGC GAGTTTCTCC GCATGGGGGC AGAAGGTTGT CGTGTGCGAC
TGGCGCGACG AGCCGCCCGC CTTCGACTAT TACGTATCGA TCCTGAGCCT GCATCACAGG
ATGCGCGAGC TGGGCGTCGC GTGCCCGGAG GCGGTCGGAC CGTATCTGTC GTGTAATCCG
GCGGAAGTGG AGCGATTTCG GTCATATCGG CTCGACGAAA ATGCGCTGGC CGTCGGCGTG
ATCTATGCCG GCAAGTCGGA GATGTTGCTC GATGCGCAGC GGTCATTGCC TGAATCCGTA
GTCAGGGACC TGACGGCGCC GATCGCCGGC GTCCGTTTCT ATAGCCTGCA GATCGGCTGC
CGAGCCGCCG ATTGCGCGAT GCTGGGCAAG ATGAACGGCG TGATCGACTG GTCTATGTTG
CTGAGCCGCT TCGCGGATAC GGCGGCGGCG ATGCGCGCGC TCGATCTCGT CGTTTGCGTC
GATACCGCGG CGGTGCACCT GGCCGGCGCG TTGGGCGTGC GGGCGATGCT GCTGAATCGC
TTCGGCAGCG AGTATCGGTG GCAGCTCGAT CGGGACGACG GTGTCTGGTA CGAATCGGTG
TCGCAGGTTC GCCAGCATGC AATGAATGAC TGGACGAACG CGGTGGCTGG CGTGCGTAGC
CGATTGCGGC AGGAGGCGCT GGATCTCGGG CGGGATGCCG TGGTGCCGGG CGCGCAGTTC
TCGGCTTCCG AGGCCGGCCA GCCGGACGTG CATCGGCAGT TACGCGCGAT CGAGCAAGCA
CTGGGAAATT CGCAGTTGGA CGAAGCACGC GGCCTCATCA CGGGCTACCT GGCTCAACAT
GCCGATTCGC CGAAGGCACA GTGTCATGCA GGCGTGCTGG AATTGCTGTC CGCCAACCCG
GACGCTGCAC GAGCTTATCT CGACCGTGCG ATCCGGTTGC GCCCGGACTA CGCTGTCGCA
TACAGCAACC GGGCGGCCAC CCGCAAGGAG GGCGATGCCG AGCGCGAGGG CGACATCATC
CGCTCGATCG CATGCGATCC GTCATTCCAT GCCGGCTGGC TCAACCTCGC GCGCATTCGC
CGGCCGCATG ATGCTGCGCT CGCGCTGCAA TGCGCGCGTC GCGCCGTGCA ACTGGCGCCG
GACGATGCGG ACGCCGTTCT GCTCAGGGCG GAGCTCGCGC TCGATACTGG CGATTTTGAC
GAGGCGCTCA GCCAGTTCGA GCGGTTGCGC GAACAGCGCC CCGACGCTCC GGAGAGCTAC
GCGAACCTGA TTCCGGCGCT AGCGGCGCTG GAGCGGCGCG ACGACGCGAT CGCCGCATTG
CAGCGGGCAC TGGAGTTGAA TTCCAAGCAC CCTGGCGCCT TGAACAACGG TGTGCAGTTC
TACTTGCGGA CACAACAATA CGACAAGGCG ATGGAACTCG CGCAGCGCTA CGTCGGCGCG
CATGGCGAAC TGGCCAGTGC GCACACGATG TGCGGACTCG TCTATCACAA CCTCAAGGCT
TACGATCGCG CCGAGGCTTC GTTGCGGCGA GCGCTGGAAA TCGAGCCGCA CAACGCGGAA
GCGCTGTTTG CGCTGGGCAC CGTGCTCGAG CGGGTCGACC GGCTTGCCGA ATCGGAAGAG
GTATTGCGCC GCGCGTTGAC GATCCGCCGC GACTATCGCG TGCTGGTCAA TCTGGCGGTG
ACGTTGAACC GTCAGCAGCG GTACGAGGCG GCCCGAAGTC TCAACGACGA GGCGCTGGCG
ATCGGCGGCG GCAAGATGAA GAGCGAGTTG AAGCCGCGCA TGGCGCTGAT GCGCAAGACC
TTCGCGGGTC AACCGTTTCG TGCGGAGCTG GCGACAGTCG ACATGACCTT CGGTCCGGAC
TGGAACAACG CGCTGATCGC GCTGGTACAG GGCGACTATG TCCGGGGATT TGCGGCTTAC
GAACTGCGGC AGGAGCATCA GACCGTCTCC GGCATGACGG CGGACGAATA TCGCGCGCTG
CTGTGGCGCA GCGAGCCGCT CGCGGGCAAG CGGATCTTAC TGCTGCCGGA GCAGGGCTAT
GGCGACGTTA TTCAGTTCCT CCGCTATGTT CCGGAACTCA AGCGCAAGGG GGCGACGGTG
CTGGTCGGCG CTTCCGCACC GCTGCGCAGG TTGCTTGAAG TCGCGCCCGG CGTCGACGAG
GTGGTGCAAC TTGACGATGC CCGCCGTCCG GCGTTCGATT ATGTCTGCCC GCTGATGAGT
CTGGCGCATC GGCTTGATGT TTCGAGCGCG GAGGATTTTC TACCGTCGTT CCCCTATCTG
CGCGTACCTG AGGCGGCTTC GCAAACCTGG CGAGCGAGGT TTGCGGCGGA CAGCCGGCGC
AAGATCGGCT TGGTCTGGGC GGGGCGTAAG ATTTATCCGG CCGATAGACT GAGGTCCGTT
CCGCTGCCGG AGATGCGCGA CGTCCTCAGC GACATTCCGG ATGTTCAGTG GATCAGCCTG
CAAGTCGGCG ACTGTGCTTC CGAAGCAGCG AGCTGGCCGG CGGTGCTCGA TGTCAGTGCG
GAACTGACCG ACTTTGCGGA AACCGCCGCG CTCATCGAGT CGCTCGACAT GGTTATCACG
GTGGATACGG CCGTGGCCCA TCTGGCGGGC GCGCTCGGCA AGCCGGTCTG GATGCTGAAC
CGGATCTCCA CGGACTGGCG CTGGGGGCAG GAAGGCCAGC GGTGCGGCTG GTATCCCAGC
ATGCGTATTT TTAGACAGCA GGTTCATCTG AGCTGGGCCG AGCCGATCGG GGAACTGGCC
GATGCGCTGG AGCAGTGGCT GGATGTCGAA CGGCTGAATG CGTGA
|
|---|
| Protein sequence | MIGMYEQSKA AKRRYRDGDF ASRYFVGDGI DVGAGPDGLG RYRRQFAAMR SVREWDLADG
DAQLLAGVSD NTFDFLHSSH CLEHMRDAVE ALHSWVRVVK PGGYLVICVP DEDMYEQGVY
PSRFNPDHKW TFTIQKPQGA SWSPRSINLL EMLIPLSGVL EIERIQRVQE FFDDTLHGRD
QTLMPNVECA IELVLRKRGA AGAIMGDVRP AAAEGAAAML PCARAGTGRF DAPAGREALM
LLDSGHRDAA ERKALEALVR EPADCTAMDV LERLYLDSAR YAECADILEK LVAYAPNNAG
AWNNLGCCYG ELRRFPQARA AFQRAVDANP EYVTAYGGLA AMHYALGDPA SAEATYRAVL
ARSPEHVDSC VNLANCMLAQ EKVEDARPYI ERAGEKLLPD LNKPKDVALC APREGLTVPY
RSRIENRPIF ESMHARLGMS LLMLGRATEG LRLLEWRLGS AFVPGFDARR AQRMWRGEPL
RGKSLLLLWE QGYGDVLQGL RHVSRLAELA ERIYLPADAA VRELFEASFS AWGQKVVVCD
WRDEPPAFDY YVSILSLHHR MRELGVACPE AVGPYLSCNP AEVERFRSYR LDENALAVGV
IYAGKSEMLL DAQRSLPESV VRDLTAPIAG VRFYSLQIGC RAADCAMLGK MNGVIDWSML
LSRFADTAAA MRALDLVVCV DTAAVHLAGA LGVRAMLLNR FGSEYRWQLD RDDGVWYESV
SQVRQHAMND WTNAVAGVRS RLRQEALDLG RDAVVPGAQF SASEAGQPDV HRQLRAIEQA
LGNSQLDEAR GLITGYLAQH ADSPKAQCHA GVLELLSANP DAARAYLDRA IRLRPDYAVA
YSNRAATRKE GDAEREGDII RSIACDPSFH AGWLNLARIR RPHDAALALQ CARRAVQLAP
DDADAVLLRA ELALDTGDFD EALSQFERLR EQRPDAPESY ANLIPALAAL ERRDDAIAAL
QRALELNSKH PGALNNGVQF YLRTQQYDKA MELAQRYVGA HGELASAHTM CGLVYHNLKA
YDRAEASLRR ALEIEPHNAE ALFALGTVLE RVDRLAESEE VLRRALTIRR DYRVLVNLAV
TLNRQQRYEA ARSLNDEALA IGGGKMKSEL KPRMALMRKT FAGQPFRAEL ATVDMTFGPD
WNNALIALVQ GDYVRGFAAY ELRQEHQTVS GMTADEYRAL LWRSEPLAGK RILLLPEQGY
GDVIQFLRYV PELKRKGATV LVGASAPLRR LLEVAPGVDE VVQLDDARRP AFDYVCPLMS
LAHRLDVSSA EDFLPSFPYL RVPEAASQTW RARFAADSRR KIGLVWAGRK IYPADRLRSV
PLPEMRDVLS DIPDVQWISL QVGDCASEAA SWPAVLDVSA ELTDFAETAA LIESLDMVIT
VDTAVAHLAG ALGKPVWMLN RISTDWRWGQ EGQRCGWYPS MRIFRQQVHL SWAEPIGELA
DALEQWLDVE RLNA
|
|---|
| |