Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_1983 |
Symbol | |
ID | 4900225 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009076 |
Strand | + |
Start bp | 1948156 |
End bp | 1948950 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640135213 |
Product | short chain dehydrogenase |
Protein accession | YP_001066248 |
Protein GI | 126452344 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00829881 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACGGGTA AACGCATTCT GGTGACGGGC GCGGGCTCGG GTTTCGGCCG CGAGGTCGCG CTGCGGCTCG CCGCGAAGGG CCATTGCGTG ATCGCGGGGG TGCAGATCGC CCCGCAGATC ACCGAGCTGA GCGCCGAGGC CGCGCGGCGC GGGCTCGCGC TCGACGCGGT GAAGCTCGAC GTGACGTGCG CGCGCGAGCG CGCGCAGGCC GCGCGCTGGG ACGTGGACGT GCTGTTGAAC AACGCGGGCG CGGGCGAGGC GGGCGCGCTC GTCGATCTGC CCGTCGACAT CGTTCGCGAG CTGTTCGAGA CCAACGTGTT CGGCCCGCTC GAGCTCACGC AGCAGGTCGC GCGCGGGATG ATCGCGCGCG GGCGGGGCAG GATCGTGTTC GTGTCGTCGA TCGCGGGGCT CATCACGGGC GCGTACACGG GCGCGTACTG CGCGTCGAAG CACGCGCTCG AGGCGATCGC CGAGGCGATG CACCTGGAAC TCGCCGCGCA TGGCGTCCAG ATCGCGGTCG TCAACCCGGG GCCGTACCGC ACGGGCTTCA ACGACCGGAT GATGGAGACG CCGCGCCGCT GGCTCGACCC GGCGCGCGAC GCGGCGACGC CCGAGACGCT CACGTTCCCG CTCGAGCAGT TCGATCCGCA GGAGATGATC GAGAAGATGG TCGACGTGAC CGAGGCCGAC GGCGGGCTGT TCCGCAATCT GCTGCCCGCC GCCGCCGAGC AGATCGTGCG CGACGAGCAG GCGCACGCGT GGACGCGCCG TCAGAACGAG CGGCGCGGCG CGTGA
|
Protein sequence | MTGKRILVTG AGSGFGREVA LRLAAKGHCV IAGVQIAPQI TELSAEAARR GLALDAVKLD VTCARERAQA ARWDVDVLLN NAGAGEAGAL VDLPVDIVRE LFETNVFGPL ELTQQVARGM IARGRGRIVF VSSIAGLITG AYTGAYCASK HALEAIAEAM HLELAAHGVQ IAVVNPGPYR TGFNDRMMET PRRWLDPARD AATPETLTFP LEQFDPQEMI EKMVDVTEAD GGLFRNLLPA AAEQIVRDEQ AHAWTRRQNE RRGA
|
| |